Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1996 ATGGGAAATTGTAACGCATGCGTGAGACGAGGATCTGACGTGGAAGTCACAGTAGAAGAGAACCACTCACACTCTAACCGCGCCACCACCACCACCACCGCCGCCACCAAGAAGAAGAGAAACAAACCCAACCCATTCGCGGAGGAGCCACTAAACTCACCGGCTCCGATCCGGGTCCTAAAAGACGTTATCTCCTTATCCCACTTAACCCGAATAAGCGACAAATACGTTCTGGGTCGTGAACTCGGTCGCGGCGAGTTCGGCATAACATACCTCTGCACCGACCGAGAAACGAAGCAACAACTCGCGTGCAAGTCCATCTCAAAACGGAAGCTTCGAACCGCGATCGACGTGGAAGACGTGCGGCGTGAGGTGGCGATTATGTCAATGCTACCGGAGCATCAAAATTTGGTGAAGTTGAAAGCGACTTATGAGGATGAAGAAAACGTGCACCTTGTGATGGAGTTGTGTGAAGGTGGTGAATTGTTTGATCGGATTGTGGCACGTGGGCATTACAGTGAACGTGCGGCGGCGCACGTGGCCAGGATTATTGCGGAGGTGGTTAGAATGTGTCATGCTAATGGGGTTATGCATAGAGACCTTAAGCCTGAGAATTTTCTCTTTGCTAATAAGAAAGAGAATTCTGTTCTTAAAGCTATTGATTTTGGTCTCTCTGTTTTCTTTAAGCCTGGGGAGAGATTTTCGGAGATTGTAGGGAGTCCTTACTATATGGCACCAGAGGTTTTAAAGAGGAATTATGGGCCTGAAGTTGATATATGGAGTGCTGGTGTGATTCTTTATATTCTCTTATGTGGGGTTCCTCCATTTTGGGCAGATAGTGAACAAGGGGTTGCTTTGGCTATTCTGAGGGGTGTGATTGACTTCAAGAGGGAACCTTGGCCTCAGATATCGGAAAATGCTAAGAGCCTTGTGCGCCAGATGTTGGAGCCGGATCCTAAGAAGCGCTTGACGGCTCAACAAGTGCTTGAACATTCCTGGCTACAAAATGCAAAGAAAGCTTCAAATGTTCCATTAGGAGATATTGTGAGGACAAGGCTTAAGCAGTTCTCCGTGATGAATAGATTCAAAAAAAGAGCTCTCCGGGTGATTGCAGAACATTTATCTGTCGAAGAGGTAGAAATAATCAAAGATATGTTTACATTGATGGATACTGACAAAGATGGCAAAGTCACATATGAGGAGCTGAAGGCTGGGTTGCGGAAAGTTGGTTCACAATTGGCTGAGCCGGAGATGAAGATGCTAATGGAAGTGGCTGATGTTGATGGGAATGGAGTACTTGACTATGGAGAGTTTGTCGCTGTGACGATTCACTTGCAAAGAATGGAGAATGATGAGCATATCCACAAAGCATTCAAGTATTTTGACAAAGATGGCAGTGGGTATATCGAGTTATGTGAGCTAGAGGAAGCATTAGCAGATGAATCGGGAGAAACTGAAACTGATATATTGAATGACATCATGCGTGAAGTTGACACTGACAAGGATGGTCGAATCAGTTATGATGAGTTTGTCGCGATGATGAAAACTGGAACTGACTGGAGAAAAGCATCAAGGCAGTATTCAAGGGAGAGATTCAAGAGCTTGAGCATAAATTTGATGAAAGATGGCTCGCTTCAGCTTCATGATGGGATGAGTGGTGAGGCTGTAGTGGTTTGA 1677 0.458 MGNCNACVRRGSDVEVTVEENHSHSNRATTTTTAATKKKRNKPNPFAEEPLNSPAPIRVLKDVISLSHLTRISDKYVLGRELGRGEFGITYLCTDRETKQQLACKSISKRKLRTAIDVEDVRREVAIMSMLPEHQNLVKLKATYEDEENVHLVMELCEGGELFDRIVARGHYSERAAAHVARIIAEVVRMCHANGVMHRDLKPENFLFANKKENSVLKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWADSEQGVALAILRGVIDFKREPWPQISENAKSLVRQMLEPDPKKRLTAQQVLEHSWLQNAKKASNVPLGDIVRTRLKQFSVMNRFKKRALRVIAEHLSVEEVEIIKDMFTLMDTDKDGKVTYEELKAGLRKVGSQLAEPEMKMLMEVADVDGNGVLDYGEFVAVTIHLQRMENDEHIHKAFKYFDKDGSGYIELCELEEALADESGETETDILNDIMREVDTDKDGRISYDEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDGMSGEAVVV* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1996 558 ProSitePatterns EF-hand calcium-binding domain. 498 510 IPR018247 -
Lan1g1996 558 MobiDBLite consensus disorder prediction 23 39 - -
Lan1g1996 558 ProSiteProfiles EF-hand calcium-binding domain profile. 485 520 IPR002048 GO:0005509
Lan1g1996 558 CDD EFh 453 515 IPR002048 GO:0005509
Lan1g1996 558 ProSitePatterns EF-hand calcium-binding domain. 390 402 IPR018247 -
Lan1g1996 558 SUPERFAMILY EF-hand 362 541 IPR011992 -
Lan1g1996 558 Pfam Protein kinase domain 76 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1996 558 ProSiteProfiles EF-hand calcium-binding domain profile. 377 412 IPR002048 GO:0005509
Lan1g1996 558 PANTHER BNAA09G44420D PROTEIN 29 534 - -
Lan1g1996 558 SUPERFAMILY Protein kinase-like (PK-like) 56 361 IPR011009 -
Lan1g1996 558 ProSiteProfiles EF-hand calcium-binding domain profile. 413 448 IPR002048 GO:0005509
Lan1g1996 558 Pfam EF-hand domain pair 382 441 IPR002048 GO:0005509
Lan1g1996 558 Pfam EF-hand domain pair 452 515 IPR002048 GO:0005509
Lan1g1996 558 SMART serkin_6 76 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1996 558 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
Lan1g1996 558 Gene3D - 343 518 - -
Lan1g1996 558 Gene3D Transferase(Phosphotransferase) domain 1 162 342 - -
Lan1g1996 558 ProSiteProfiles EF-hand calcium-binding domain profile. 449 484 IPR002048 GO:0005509
Lan1g1996 558 MobiDBLite consensus disorder prediction 18 52 - -
Lan1g1996 558 PANTHER SERINE/THREONINE-PROTEIN KINASE 29 534 - -
Lan1g1996 558 ProSitePatterns EF-hand calcium-binding domain. 462 474 IPR018247 -
Lan1g1996 558 CDD STKc_CAMK 75 333 - -
Lan1g1996 558 Gene3D Phosphorylase Kinase; domain 1 77 161 - -
Lan1g1996 558 ProSiteProfiles Protein kinase domain profile. 76 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1996 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Lan1g1996 558 SMART efh_1 489 517 IPR002048 GO:0005509
Lan1g1996 558 SMART efh_1 417 445 IPR002048 GO:0005509
Lan1g1996 558 SMART efh_1 381 409 IPR002048 GO:0005509
Lan1g1996 558 SMART efh_1 453 481 IPR002048 GO:0005509
Lan1g1996 558 ProSitePatterns EF-hand calcium-binding domain. 426 438 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1996 Lan-Chr1 35152369 35156338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1996 1 558 EF-hand Containing Proteins AT1G18890 77.957 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lan1g1996 Pkinase 1.5e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1996 K13412 - gmx:100809838 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0869 12 15778626 15783115 Lan1g1996 1 35152369 35156338 LSH