Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1993 ATGGACGGTGGCGATTTTTCATTTTCCGATAAGGAAGAGATTGTTGAGGATTCGCGTGACATTCTTTCGCGAGTTCGATTCCTCGATGCTCCTATACTATTGTTCCTTTGTTTTCATAAAGCTGTGCGTTCTGAATTACGCTTGCTTCGTTGCTTGGCGGAAACGGCGTCGTTTGAGGATGATACTCAACGAAGTAGAAAATCAATTATTAAGCTTCGAAGTAGGTTTCGGTTTCTTCAACTAGGTTATAAGTATCATTGCGCTGCAGAAGATGAGGTTGTCTTCCTTGCACTGGATATACATGTGAAAAATGTGGCATGTACATATTCACTTGAACATAGCAGCATCGATGAACTCTTCGAGTCTATCTTTCACTTCTTGGATGAGCTAATGGGTCCTAGTCAGAATTTTTCGAAGTTGTTCCAAGAACTTCTGTACAATATTGGCATATTGCAAACCTCCATTAACCAAAATATGCTGAAAGAAGAAGAGCAGGTTTTTCCTCTGTTGATGCAGAAATTATCTACTAAAGAACAGGCTTCACTTGTGTGGCAATTCATATGTAGTGTTCCTATAATGTTGCTAGAGGAAGTTTTGCCATGGATGGTATCCTTCCTTTCTGCAGACAAACAAACAGAAGTTACTCAATTTTTAAATGAAATTGCACCAATGGAGAAAGCACTGCAAGAGGTTTTGGTTTCTTGGGTTGGAAGCAAGAACCAAACCTTCGATGAGGCCTATTTCCAAATTGAAGAAGTTCAAGGTGCTGATGGTTCCATAAGTAAAGAAAGACCACTTAGGTTGAGTTCTTGCAATAAGAATTCCAATGAAATTTCAAGTTGGATGAAAATGAATGGCCTAGAAATAGAAGATGACGTCAACTGGATTGATGTTCTTCATCTCTGGCATGAGGCCATCAAGAAAGATTTGAAAGAAATTTTGAAAGAGCTTCATCTAATAAGAAACTCCAGCTGTTTTCAGAATTTAGATGCAATAGTTATCCAAATAAAGTTCTTTGCTGATGTCCTCATCTTTTACAGCATTGCTCAGAAGACATGGTTTCATCCTGTACTGAATAAACCTGATTATGACTGGTTGCCCAAGTCTAGTGAACGATTTCTTGGTGAAAGTCACATTGAAGATTTACAGCAGTTGCTATGTAACTCGGAAACTGGAATGCCTTTGTCCAGCTTCGTAGAGGAGCTTTGCAGAAAACTTGAATCATTTGTATCCGGAGTCAAAAAACAATGTGCTTTTCAAGAAACTGAGGTATTTCCTGCCATTAAAAAGAACTGCAGAAATGGAATACAAGAGAGACTTTTGAGCTCTAGCTTGAAAATGATGCCACTTGGGTTACTCAGATGTGTTATAAATTGGTTTTCGGTTCACTTATCTGAAAAAGAGTCCAGGTTCATTCTCTATTGCATAAAGAAAGGAAATCTTTTTTCCTGTGAAGCTTTTTCATCGCTATTACATGAGTGGTTCCGCATTGGTTATTCAGGTAAAACCTCCATTGAGAAATTCAGACAAGACTTGCAGCATATGTTCAAAAGTAGGTGGTCTTTTTTCCCTGAGAAAATTAAGCAAGTGCCTGGGTTTTCTGTATTAATTTCTGATCAACATCCCAATAAAGTCTCTGGCAAGAATTGTTTGTCCTATTCCTCATCTTGTGGGTCAAACAACTCATATAAGTATGAGACACCATACTCCACTGGAATTAATCTGCATATATTTTTCCCTGCCACAATTAGGAGGTTACACCAGAGTTCTAGATTTCATGCATCAAATAGTTCTTCCATTTCCTTTCTTGGTGATCCAAAACCAATTGACTTAATATATTTTTTTCACAAGGCTATCAGGAAAGATTTGGATTACCTTGTTTTTGGCTCCGCTCAGTTAGAACAAAATGCCAAGTTGCTTATGGATTTCCGCAAAAAATTTCATCTCATATGTTTTCTTCATCAAATCCATATTGATGCAGAGGATGAGTTAGTTTTCCCAGCCTTGGAGGCACGGGGTAAACTCAAAAACATTAGCCATGCTTACACTTTTGATCACAAACTTGATGATGAGCACTTTGATAAAGTATCCCGGATCCTTGATAAGATGTCTGAATTACATCTTTCAGTTTCTACCATCGATTCAAATGTAAGGGATAATAGAATGCTAAGGCATCATCATTTATGCAGGAAGCTTCAACAAATGTGCAAGTCAATGCATAAGTTACTTTCTGACCATCTGAGTCGTGAGGAAATAGAAATTTGGCCTATTATTAGGGAATTCTTCTCGAGTTTGGAGCAAGAGAAGATTATAGGATGCATGCTTGGAAGAATAAAAGCAGAAATATTACAGGATATGATACCTTGGCTAATGGCATCTTTAACACAAGAACAACAGCATGTTGTAATGCTCTTATGGTCTATGGCTACTAAAAACACAAGTTTTGATGAATGGTTAGGTGAATGGTGGGATGGGTACAGTATAGCTAAGGAAACAGAGGGATCAAATGATGACCCTCTCCCAACCATTGACCCACTGGAGGTCATATCCAAATATTTGTCTGAAGAAGTTCTTAACAAATTACAAGAAGAATCCTCTCCCAACAAAAGCATAAACTTTTTGCAGAAGGATCATATTGGTGATAATGTTGACCTGTCTAACTACAATCCTGATGGCAAAGTTAAGGTTAATAGCGCAGAACAAAATAATAATGAGTGTTCAAAATGCACAAACCAATTCCATGATAACAAAAAACATGCTTGCAATCAAGTAACAGATACGACAAATTTGGTCAATAATGGTCAATCTTTTCAATTATTTGACAAGTCTGGGAATGACGATCGACTTCTGAAATTGAGTCAAGATGATTTGGAGATGGCAATAAGAAGGGTGTATCGCGACTCATGCTTAGATCCCCAGAAGAAGTCATACATAATACAGAACCTGCTAATGAGCCGCTGGATTATTAGTCGGCAGATCTCTTCTACAGAAGTCAATATGAAAAGCGATGGTCAGGAATTTCCTGGGAAGCATCCATCTTATAGGGACCCTCTCAGACTAATCTATGGTTGCAAACACTACAAGAGAAACTGTAAGCTTCTTGCTCCGTGCTGCAACCAACTTCATACCTGCATACATTGCCATAACGAGGTATCAGAACCAGATCATTCACTTGACAGGAAATCTATTACAAAGATGATGTGCATGAAGTGCTTGGTGATCCAACCAATCAGTGCTACATGCTCAACCGTTTCTTGCGGTAACTTATCCATGGCAAAATATTACTGCGGGATCTGCAAATTATTTGAAGATGAAAGAGAAATTTACCACTGTCCATACTGTAACCTGTGCCGAGTTGGAAAGGGCTTGGGCGTTGACTACTTTCACTGTATGAATTGCAATGCTTGTATGTCTCGTTCTCTTATGGTACACACATGTAGGGAGAAACATTTAGACAGTAACTGTCCAATTTGCCATGAATATATCTTCACATCCCGTTCTCCCGTGAAAGCCCTCTCATGTGGTCATGTCATGCACTCCACATGTTTTCAGGAATATACATGCTTTAACTATACCTGTCCAATATGTAGTAAGTCGCTTGGAGACATGCAGGTATATTTTAACATATTAGATGCATTACTGATCGAAGAGAATGTTCCTGAAGAACGTTCGGGTCAAACTCAGTTAGGAATCGTGATTACATCTCAAGTCTGGAATCCAAGAAGTGCTGTGTGGATGATGCCATGA 3747 0.3859 MDGGDFSFSDKEEIVEDSRDILSRVRFLDAPILLFLCFHKAVRSELRLLRCLAETASFEDDTQRSRKSIIKLRSRFRFLQLGYKYHCAAEDEVVFLALDIHVKNVACTYSLEHSSIDELFESIFHFLDELMGPSQNFSKLFQELLYNIGILQTSINQNMLKEEEQVFPLLMQKLSTKEQASLVWQFICSVPIMLLEEVLPWMVSFLSADKQTEVTQFLNEIAPMEKALQEVLVSWVGSKNQTFDEAYFQIEEVQGADGSISKERPLRLSSCNKNSNEISSWMKMNGLEIEDDVNWIDVLHLWHEAIKKDLKEILKELHLIRNSSCFQNLDAIVIQIKFFADVLIFYSIAQKTWFHPVLNKPDYDWLPKSSERFLGESHIEDLQQLLCNSETGMPLSSFVEELCRKLESFVSGVKKQCAFQETEVFPAIKKNCRNGIQERLLSSSLKMMPLGLLRCVINWFSVHLSEKESRFILYCIKKGNLFSCEAFSSLLHEWFRIGYSGKTSIEKFRQDLQHMFKSRWSFFPEKIKQVPGFSVLISDQHPNKVSGKNCLSYSSSCGSNNSYKYETPYSTGINLHIFFPATIRRLHQSSRFHASNSSSISFLGDPKPIDLIYFFHKAIRKDLDYLVFGSAQLEQNAKLLMDFRKKFHLICFLHQIHIDAEDELVFPALEARGKLKNISHAYTFDHKLDDEHFDKVSRILDKMSELHLSVSTIDSNVRDNRMLRHHHLCRKLQQMCKSMHKLLSDHLSREEIEIWPIIREFFSSLEQEKIIGCMLGRIKAEILQDMIPWLMASLTQEQQHVVMLLWSMATKNTSFDEWLGEWWDGYSIAKETEGSNDDPLPTIDPLEVISKYLSEEVLNKLQEESSPNKSINFLQKDHIGDNVDLSNYNPDGKVKVNSAEQNNNECSKCTNQFHDNKKHACNQVTDTTNLVNNGQSFQLFDKSGNDDRLLKLSQDDLEMAIRRVYRDSCLDPQKKSYIIQNLLMSRWIISRQISSTEVNMKSDGQEFPGKHPSYRDPLRLIYGCKHYKRNCKLLAPCCNQLHTCIHCHNEVSEPDHSLDRKSITKMMCMKCLVIQPISATCSTVSCGNLSMAKYYCGICKLFEDEREIYHCPYCNLCRVGKGLGVDYFHCMNCNACMSRSLMVHTCREKHLDSNCPICHEYIFTSRSPVKALSCGHVMHSTCFQEYTCFNYTCPICSKSLGDMQVYFNILDALLIEENVPEERSGQTQLGIVITSQVWNPRSAVWMMP* 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1993 1248 CDD Hr-like 610 756 - -
Lan1g1993 1248 SUPERFAMILY Zinc hairpin stack 1092 1146 IPR037275 -
Lan1g1993 1248 Gene3D nmb1532 protein domain like 31 188 - -
Lan1g1993 1248 Gene3D nmb1532 protein domain like 605 775 - -
Lan1g1993 1248 Pfam Ring finger domain 1154 1196 IPR001841 -
Lan1g1993 1248 SMART ring_2 1155 1196 IPR001841 -
Lan1g1993 1248 ProSiteProfiles Zinc finger RING-type profile. 1155 1197 IPR001841 -
Lan1g1993 1248 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 22 1229 - -
Lan1g1993 1248 ProSiteProfiles Zinc finger CTCHY-type profile. 1091 1154 IPR017921 -
Lan1g1993 1248 Pfam CHY zinc finger 1024 1101 IPR008913 GO:0008270
Lan1g1993 1248 SUPERFAMILY RING/U-box 1144 1202 - -
Lan1g1993 1248 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 22 1229 - -
Lan1g1993 1248 CDD Hr-like 38 168 - -
Lan1g1993 1248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1148 1199 IPR013083 -
Lan1g1993 1248 SUPERFAMILY CHY zinc finger-like 1016 1082 IPR037274 GO:0008270
Lan1g1993 1248 CDD RING-H2_Pirh2 1154 1197 - -
Lan1g1993 1248 ProSiteProfiles Zinc finger CHY-type profile. 1017 1088 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1993 Lan-Chr1 35109573 35120700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1993 607 851 C2H2 Transcription Factor Family AT3G18290 36.680 8.88e-48 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1993 K16276 - gmx:100802706 1908.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0866 12 15739374 15751132 Lan1g1993 1 35109573 35120700 LSH
Lan1g1003 1 20467203 20470919 Lan1g1993 1 35109573 35120700 LSH