Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1986 ATGGAACCTCCTATCATCAATGACTCTACATTCTCTTCTTCTTCTTACTCCTTCTCTGATATTTGGCCTATGCCTCCTCCTCAAATTCTCGATGCTTCGGCCGAAAACTCAACGGTAACTCACCATTCTCCAAATCACAGGAAGAGGAAGGACACTAGCTCTCATACTACTCCAAATAACTTGAATGATTCTGGCAATAAAAATATAAAATTGACTGAAGCCGATGCGATTTCGACAGCATGTAACAAATTAGATGAACAAAGTACTAAACCTTCTGAGCAGGCACCTAAGCAAGACTATATCCATGTCAGAGCAAGAAGGGGCCAAGCCACTGATAGCCATAGTCTTGCTGAGAGGGCAAGAAGAGAAAAAATCAGTGAAAGGATGAAGATTCTTCAAGATATAGTCCCTGGATGCAACAAGGTAATTGGTAAAGCACTAGTCCTAGATGAGATAATCAATTACATCCAGTCATTGCAGCAACAGGTTGAGTTCCTTTCAATGAAGCTTGAAGCCGTTAATTCGAGATTGAACATGAACCCGACTGTTGAATGTTTTTCTTCAAAAGATGTTGGTACTCAGCCATTGGATATTGCCGGAATGATATTTGGATCACAAGCAGGCAGGGGTTATGCTCAGGGATCACAACCTGGATGGCTGCATATGCAGATAGGCGGTGGTTTCGGGAGAGCGACATAA 699 0.4235 MEPPIINDSTFSSSSYSFSDIWPMPPPQILDASAENSTVTHHSPNHRKRKDTSSHTTPNNLNDSGNKNIKLTEADAISTACNKLDEQSTKPSEQAPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDIVPGCNKVIGKALVLDEIINYIQSLQQQVEFLSMKLEAVNSRLNMNPTVECFSSKDVGTQPLDIAGMIFGSQAGRGYAQGSQPGWLHMQIGGGFGRAT* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1986 232 Gene3D - 106 183 IPR036638 GO:0046983
Lan1g1986 232 Coils Coil 156 176 - -
Lan1g1986 232 MobiDBLite consensus disorder prediction 1 68 - -
Lan1g1986 232 Pfam Helix-loop-helix DNA-binding domain 113 160 IPR011598 GO:0046983
Lan1g1986 232 CDD bHLH_AtBPE_like 99 182 - -
Lan1g1986 232 MobiDBLite consensus disorder prediction 1 21 - -
Lan1g1986 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 159 IPR011598 GO:0046983
Lan1g1986 232 PANTHER BNAC05G07950D PROTEIN 51 232 - -
Lan1g1986 232 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 51 232 IPR024097 GO:0006355
Lan1g1986 232 SMART finulus 115 165 IPR011598 GO:0046983
Lan1g1986 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 179 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1986 Lan-Chr1 35043410 35045924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1986 1 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 45.965 4.04e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan1g1986 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1986 - - gmx:100799646 297.745