Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1985 ATGTCTTGCAATTTTACCGCCGCTGACTCCGCCGTCTCCGGCGACCGTGCCGCCGGCGAATTCATGCTGTTCGGAGTTAGGGTTGTGGTTGATTCGATGAGGAAGAGTGTTAGTTTGAACAATCTTTCACATTACGAGATTCCTCAAGATGCTTCTTCCAACAACAACAATAACACAAGCAACAAAGATGCTATCGCCGCCGGTTATGCCTCCGCCGATGACGCCATCCCTCATAACTCCGCCAAGCTCCGCGAGCGCAAGAGAGGTATTCCGTGGACGGAGGAAGAACACAAGCTGTTTTTGGTGGGATTGCAGAAAGTGGGGAAAGGTGATTGGAGAGGAATCTCCAGGAACTATGTCAAGACTAGAACCCCAACCCAGGTTGCTAGCCATGCTCAGAAATACTTTCTCCGCCGCACTAACCTCAACCGCCGTCGCCGTAGATCTAGCCTCTTTGACATCACGACTGACACTGTACCAATGGAGGAAGAACAGACCCAGAATCAAGACAGTGCTTCTGATTCACAATCTATGTGCCCTGCAACCACTGAAGCTAGCAACAAGAATGGATTTCAAGTGATGCCGATGTATCCGATAGGTGTTGGTTCTGGAATGTTTTCAATCCAGGCTGAGAATCCCATGGAAGAACTCACTTTGGGACAAGGAATTATGGAACACAATGTATCAACCAACCAAGTTCTTCTAATTCCTAAAGCTACCACAATGTCTAATATTGCCTCCAATTCAAGTTCAATTATGGATCCACCAACACTGTCCCTTGGGCTATCCTTCTCATCTCATCCACAAACATCCTCAAGACATTCACCTTTGCCTGTAATACCTCGTTTCAATAATGGAGATAACATCATAAGCGTTGCTTGA 882 0.4705 MSCNFTAADSAVSGDRAAGEFMLFGVRVVVDSMRKSVSLNNLSHYEIPQDASSNNNNNTSNKDAIAAGYASADDAIPHNSAKLRERKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTDTVPMEEEQTQNQDSASDSQSMCPATTEASNKNGFQVMPMYPIGVGSGMFSIQAENPMEELTLGQGIMEHNVSTNQVLLIPKATTMSNIASNSSSIMDPPTLSLGLSFSSHPQTSSRHSPLPVIPRFNNGDNIISVA* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1985 293 SMART sant 88 138 IPR001005 -
Lan1g1985 293 Gene3D - 90 142 - -
Lan1g1985 293 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 87 138 IPR006447 GO:0003677
Lan1g1985 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 140 IPR017930 -
Lan1g1985 293 ProSiteProfiles SANT domain profile. 92 140 IPR017884 -
Lan1g1985 293 MobiDBLite consensus disorder prediction 157 187 - -
Lan1g1985 293 SUPERFAMILY Homeodomain-like 86 140 IPR009057 -
Lan1g1985 293 Pfam Myb-like DNA-binding domain 91 136 IPR001005 -
Lan1g1985 293 PANTHER KIN2 16 293 - -
Lan1g1985 293 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 16 293 - -
Lan1g1985 293 CDD SANT 91 136 IPR001005 -
Lan1g1985 293 ProSiteProfiles Myb-like domain profile. 84 136 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1985 Lan-Chr1 35038625 35040709 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan1g1985 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1985 - - aip:107632799 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0860 12 15679542 15681766 Lan1g1985 1 35038625 35040709 LSH
Lan1g1388 1 23592596 23594870 Lan1g1985 1 35038625 35040709 LSH