Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1981 ATGTCTTCATCTTGTCCTACTAATCCTTCTTCTTCCACCACAAGGCCTCACACTTATAATCGCAAACAAAAATCCTTAGGCCTCTTATGCACCAACTTCTTGAACTTGTATAATCGAGATGAGATTCATTTGATTGGACTTGATGATGCCGCAGCTAGGTTAGGTGTGGAGAGAAGACGGATCTATGATATTGTTAACGTTCTTGAGAGTATTGGTGTGCTTGCGAGAAAGGCTAAGAATCAATACACTTGGAAAGGTTATGCGGCTATTCCTGGTGCTTTGCATGAACTTAAGGAAGAGGCTCTAAGGGAGAAATTAGAGGGTTCACAAGGAGTCAATGCAAAAGTTTGGGATGATGAGGATGATGATGAAACCCTGTCCAATTCTGGAAGCCAGAATGATAAGAGCATTCCTAATTCTGATGCTCCTAAGTCTCATAAGAATGATAATAGAAGGGAAAAATCCTTGGCGCTGCTTACTCAGAATTTTGTCAAGCTCTTTATATGCTCTAATATGGAATTGATCTCCCTTGATGATGCTGCAAAGTTGTTGCTTGGGGATGCCCATAGTTCATCCATAATGAGAACGAAAGTAAGACGTCTATATGACATTGCAAATGTGTTATCTTCCATGAACCTCATTGAGAAGACCCATACTGCAGATACAAGAAAACCAGCATTCAGGTGGCTGGGTTTGAATGAAAACCAAAGTTCAAATGTCATCAATTCTAGGAAAAGGGCGTTTGGAACTGATATCTCAAACATTGATTTTAAGAGGAATAAGGTGGGTGTATTCGTAAATGGGGAGTTCAGCCAGAAGCCTATGAAGCAAAAAGAACTGGAACATGTTAGTGGCCTAGGTCAGGTAGATAAAAGTAATTTAAAACATTGCACAAAACAGAGTTCAAGAAGCTACCAGTTTGGTCCTTTTGCTCCAGCAAGTGTGCACAAAGTTGGACCTTCTGAGAATAATAGTGTGAAGCAGGTCCATGATTGGGACAGTCTTGCAACTGTACACCGTCCCCATTATCAAAATGAGGCTTTGAAAGAACTCTTCTCCCATTACATGGAAGCATGGAAATCATGGTACTCTGAAGTTGCTGAGAAGAAGCCATTACACATTTTGTAA 1128 0.4051 MSSSCPTNPSSSTTRPHTYNRKQKSLGLLCTNFLNLYNRDEIHLIGLDDAAARLGVERRRIYDIVNVLESIGVLARKAKNQYTWKGYAAIPGALHELKEEALREKLEGSQGVNAKVWDDEDDDETLSNSGSQNDKSIPNSDAPKSHKNDNRREKSLALLTQNFVKLFICSNMELISLDDAAKLLLGDAHSSSIMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGLNENQSSNVINSRKRAFGTDISNIDFKRNKVGVFVNGEFSQKPMKQKELEHVSGLGQVDKSNLKHCTKQSSRSYQFGPFAPASVHKVGPSENNSVKQVHDWDSLATVHRPHYQNEALKELFSHYMEAWKSWYSEVAEKKPLHIL* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1981 375 SUPERFAMILY "Winged helix" DNA-binding domain 20 84 IPR036390 -
Lan1g1981 375 SMART E2F_TDP_2 21 86 IPR003316 GO:0005667|GO:0006355
Lan1g1981 375 SMART E2F_TDP_2 151 231 IPR003316 GO:0005667|GO:0006355
Lan1g1981 375 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 2 366 - -
Lan1g1981 375 MobiDBLite consensus disorder prediction 113 151 - -
Lan1g1981 375 Pfam E2F/DP family winged-helix DNA-binding domain 153 231 IPR003316 GO:0005667|GO:0006355
Lan1g1981 375 Pfam E2F/DP family winged-helix DNA-binding domain 22 86 IPR003316 GO:0005667|GO:0006355
Lan1g1981 375 PANTHER TRANSCRIPTION FACTOR E2F 2 366 IPR015633 GO:0000978|GO:0006357
Lan1g1981 375 Gene3D - 145 233 IPR036388 -
Lan1g1981 375 Gene3D - 15 88 IPR036388 -
Lan1g1981 375 SUPERFAMILY "Winged helix" DNA-binding domain 153 232 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1981 Lan-Chr1 34986231 34993258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1981 17 372 E2F-DP Transcription Factor Family AT3G48160 56.334 5.55e-134 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lan1g1981 E2F_TDP 1.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1981 K09391 - gmx:100795252 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0854 12 15611186 15614361 Lan1g1981 1 34986231 34993258 LSH