Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1980 ATGGCTATTCCATTACCAAATCGAGAGCTATTCATAGATGGAGAATGGAAAGCTCCATTACTCAACAAACGAATTCCAATCATCAACCCCTCCACCCAACAGATCATTGGTGATATCCCAGCAGCTACTAAGGAAGATGTGGATCTAGCTGTTGCTGCTGCTAAATCCGCATTGTCTCGTAACAAAGGTGCTGATTGGTCTTCTGCTTCTGGTTCCGTTCGTGCTCGTTATCTTCGTGCCATTGCTGCAAAGATCACTGAGAAAAAGACTGAATTGGGGAAACTTGAAGCACTTGATTGTGGAAAACCACTCGATGAAGCTCTATGGGACCTGGATGATGTTGCTGGTTGTTTTGATTACTATGCTGACCTTGCTGAAAAATTGGATGAAAAACAAAAGACTCCTGTTTCTGTTCCCATGGAGACTTTCAGGAGTTATGTTCTTAAGGAGCCTATCGGGGTTGTTGGATTGATCACACCATGGAACTATCCTCTGTTAATGGCGACATGGAAGGTTGCTCCTGCTCTGGCTGCTGGTTGTGCTGCAATATTGAAGCCATCTGAATTGGCATCTGTGACCTGTTTGGAGCTGGCTGAAATATGCAGAGAAGTAGGCCTTCCTCGAGGTGTATTAAACATTCTCACTGGATTAGGCCCTGAAGCTGGTGCTCCTTTAGCATCCCACCCCGATGTAGACAAGATTGCTTTCACCGGAAGCTCTGCAACTGGGAGTAAGATCATGACAGCTGCAGCACAGCTGATCAAGCCTGTTTCACTAGAGCTCGGTGGAAAAAGCCCCATCGTTGTTTTTGAGGATGTTGACCTTGACAAGGCTGCTGAATGGACCCTCTTTGGCTGCTTTTGGACAAATGGTCAGATATGCAGTGCGACTTCCCGCCTGATAGTACATGAAAGTATTGCATCAGAATTTTTGAACAGGCTTGTGAAATGGGCCAAAAACATCAAAATTTCAGATCCTTTCGAGGAAGGTTGCAGGCTAGGTCCTGTTGTTAGTGAAGGACAGTATGAAAAAATATTGAAGTTTATCTCAAATGCCAAGAGTGAGGGTGCAACAATTTTGACCGGTGGGTCTCGCCCAGAGCATCTGAAGAAGGGTTTCTTCATTGAACCAACCATCATAACTGATGTAACTACCTCCATGCAAATTTGGAGGGAAGAAGTATTTGGACCTGTTCTTTGCGTAAAAACATTTAGTACTGAGGAAGAAGCTATTGATCTAGCGAATGACACCATCTATGGCTTAGGTTCTGCTGTAATATCGAACGATCTAGAAAGATGTGACCGCTTAACTAAGGCTTTTAAGGCTGGAATTACATGGATCAATTGCTCTCAACCATGCTTCACTCAAGCCCCATGGGGAGGCAACAAACGTAGTGGTTTCGGTCGTGAATTAGGAGAATGGGGGCTTGATAACTACTTGAGTGTGAAGCAAGTAACTCAGTATATCTCTGATGAAGCTTGGGGCTGGTATAAGAATCCTACATAA 1506 0.4442 MAIPLPNRELFIDGEWKAPLLNKRIPIINPSTQQIIGDIPAATKEDVDLAVAAAKSALSRNKGADWSSASGSVRARYLRAIAAKITEKKTELGKLEALDCGKPLDEALWDLDDVAGCFDYYADLAEKLDEKQKTPVSVPMETFRSYVLKEPIGVVGLITPWNYPLLMATWKVAPALAAGCAAILKPSELASVTCLELAEICREVGLPRGVLNILTGLGPEAGAPLASHPDVDKIAFTGSSATGSKIMTAAAQLIKPVSLELGGKSPIVVFEDVDLDKAAEWTLFGCFWTNGQICSATSRLIVHESIASEFLNRLVKWAKNIKISDPFEEGCRLGPVVSEGQYEKILKFISNAKSEGATILTGGSRPEHLKKGFFIEPTIITDVTTSMQIWREEVFGPVLCVKTFSTEEEAIDLANDTIYGLGSAVISNDLERCDRLTKAFKAGITWINCSQPCFTQAPWGGNKRSGFGRELGEWGLDNYLSVKQVTQYISDEAWGWYKNPT* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1980 501 Pfam Aldehyde dehydrogenase family 23 485 IPR015590 GO:0016491
Lan1g1980 501 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Lan1g1980 501 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 500 - -
Lan1g1980 501 SUPERFAMILY ALDH-like 6 486 IPR016161 GO:0016491
Lan1g1980 501 CDD ALDH_F10_BADH 27 487 - -
Lan1g1980 501 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Lan1g1980 501 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 1 500 - -
Lan1g1980 501 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Lan1g1980 501 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1980 Lan-Chr1 34980906 34985560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1980 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.437 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1980 K00130 - gmx:100170731 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0853 12 15599312 15603931 Lan1g1980 1 34980906 34985560 LSH