Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1973 ATGAGCAGAAGCATTCTACTACTTGAAGCCTCACAAAAGGATGATATTGATAATTTGAAATACTCATCTCCTCAACCACTTTTCTCTTATGAATATTATGATGGTAATGTTAGTGATGAAAAAGAATCAACAACACCTTCATCTTTATCTATTAGCAAAATCAGTCCATTGATCTTGTTGGTTATTATAGTTCTAGCACTTGTCTTCTTCATCTATGGACTTATCCATTTGGTTCTATGGTTCCTTATGAAAACCTCACCCTCTTCAAATCTTTACAACTCCAATAGAGTTCAAGAATCCACCCATTCCCGTTCTCTTCAAAGGCAACTTCAACAGCTTTTTCGTTTGCATGATTCAGGTCTAGACCAAGCACTCATAGATTCTCTTCCTATATTCTACTATCATGATTTGTTAGGATTGAAGGAACCATTTGATTGTGCTGTGTGTCTATGTGAATTTTCAAACCAAGACAAGCTTAGATTGGTTCCAACATGCAGCCATGCATTTCATATGAATTGTCTTGACACATGGCTTCTCTCAAACTCAACATGTCCTCTTTGTAGAGCAACTCTTTCCACCTCTAATGGCCCATTTGAGAATCAAATATTGAATATGTTGAGAATCACAAATGAGGAAGAGAATGAGTATTCACATAATCAAAGAGAAGTAAATGAAGAAGAACAAGTTAGTAGGAAAAGGGTACTTTCAGTGAGACTTGGATCATTCAGAAATATTGATATAGGAAAAGTAGAGAGTAGTAGTCATAGTAGTTATGATGTGAGGAGATGCTACTCCATGGGTTCATATCAGTATGTGGTTGATGATTCAAATTTGCAAGTTGTGTTATCACAATCTCATTATCATAGAGGGAGTGAAGTGAATGAGAATGTGGATGGAAGGAAAATAGAGAATAGAACAAAAGGTGACAGCTTTTCTGTTTCAAAGATATGGCTTTGGTCCAAGAAGAGCAAATATCATAGTAGTTCTTCTTATGTTGCTTTCCCTTGA 1008 0.3581 MSRSILLLEASQKDDIDNLKYSSPQPLFSYEYYDGNVSDEKESTTPSSLSISKISPLILLVIIVLALVFFIYGLIHLVLWFLMKTSPSSNLYNSNRVQESTHSRSLQRQLQQLFRLHDSGLDQALIDSLPIFYYHDLLGLKEPFDCAVCLCEFSNQDKLRLVPTCSHAFHMNCLDTWLLSNSTCPLCRATLSTSNGPFENQILNMLRITNEEENEYSHNQREVNEEEQVSRKRVLSVRLGSFRNIDIGKVESSSHSSYDVRRCYSMGSYQYVVDDSNLQVVLSQSHYHRGSEVNENVDGRKIENRTKGDSFSVSKIWLWSKKSKYHSSSSYVAFP* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1973 335 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Lan1g1973 335 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 17 329 - -
Lan1g1973 335 SMART ring_2 146 187 IPR001841 -
Lan1g1973 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 196 IPR013083 -
Lan1g1973 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 17 329 - -
Lan1g1973 335 SUPERFAMILY RING/U-box 125 198 - -
Lan1g1973 335 CDD RING-H2_PA-TM-RING 145 188 - -
Lan1g1973 335 Pfam Ring finger domain 145 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1973 Lan-Chr1 34934159 34935245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1973 41 330 C3H Transcription Factor Family AT2G18650 40.588 1.17e-56 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1973 - - aprc:113846147 379.407