Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1969 ATGAAAGAAAACAGTGATGGTTTTGTAAGAGCAGATCAGATTGATCTGAAGAGCATAGATGAACAACTAGAGAGGCATCTGAACAAGGTGTTGATAATGGAAAAGAATAAGCAAATAGATGAAGAAGATTGTAATCATGTTCATGTACACACAAGTGGCAGTGCTAGTAATTCACCTCCTTCTGCTACTAAATTTAGAAGTGCCATCAAGAAGAAGAAGAAGAAGAAGCAGGAATGGGAGATTGAACCTTCTAAACTAATCATCAAGAGCGTTATATCTCGTGGCACTTTTGGCACTGTTCACCGTGGTATCTATGATATTCAACATGTTGCTGTTAAATTGCTGGACTGGGGTGAAGAAGGCCAAAGAACCAATGCCGAAGTTGCTTCCCTGAGGACAGCGTTTATACAGGAAGTCGCTGTTCGGCATAAACTTGATCATCCTAATGTCACTAAGTTCATAGGAGCAACAATGGGGTCTGCCGAATTACAGATACAAACTGATAATGGCCTAATCGGCATGCCGAGCAACGTGTGTTGTGTTGTTGTGGAGTATCTTTCTGGTGGTACACTGAAAACTTTCCTAATAAAGAACAGGAGGAGGAAGTTAGCTTTTAAGGTTGTCATCCAGCTAGCACTTGATCTTGCAAGAGGGCTGAGTTATCTTCACTCTCAGAAGATTGTCCACAGAGATGTAAAGACAGAGAACATGCTGTTGGATAAGTCACGCACGGTCAAAATTGCTGATTTTGGAGTTGCTCGTGTTGAGGCATCGAATCCTAATGATATGACCGGGGAGACTGGTACTCTTGGTTACATGGCTCCGGAGGTTCTAAATGGCAACCCCTACAACAGGAAATGTGATGTGTACAGTTTTGGTATCTGTTTATGGGAAACATATTGTTGTGACATGCCGTATCCGGACTTAAGTTTCTCAGAGATTACTTCAGCAGTTGTTCGCCAGAATCTGAGACCAGAAATTCCAAGATGTTGTCCAAGTTCTCTAGCAAATGTAATGAAGAAATGCTGGGATGCCAGTCCCGATAAGCGGCCGGAGATGGATGAGGTAGTTTCGATGCTGGAGGCCATTGACACATCAAAAGGTGGAGGTATGATCCCTCCGGATCAGCAAGAAGGTTGTCTTTGCTTCCACAAGCGTAGAGGGCCTTGA 1170 0.4325 MKENSDGFVRADQIDLKSIDEQLERHLNKVLIMEKNKQIDEEDCNHVHVHTSGSASNSPPSATKFRSAIKKKKKKKQEWEIEPSKLIIKSVISRGTFGTVHRGIYDIQHVAVKLLDWGEEGQRTNAEVASLRTAFIQEVAVRHKLDHPNVTKFIGATMGSAELQIQTDNGLIGMPSNVCCVVVEYLSGGTLKTFLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKSRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWETYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPSSLANVMKKCWDASPDKRPEMDEVVSMLEAIDTSKGGGMIPPDQQEGCLCFHKRRGP* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1969 389 Gene3D Transferase(Phosphotransferase) domain 1 187 373 - -
Lan1g1969 389 CDD STKc_MAP3K-like 92 360 - -
Lan1g1969 389 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 383 - -
Lan1g1969 389 PRINTS Tyrosine kinase catalytic domain signature 183 196 IPR001245 GO:0004672|GO:0006468
Lan1g1969 389 PRINTS Tyrosine kinase catalytic domain signature 221 239 IPR001245 GO:0004672|GO:0006468
Lan1g1969 389 PRINTS Tyrosine kinase catalytic domain signature 287 309 IPR001245 GO:0004672|GO:0006468
Lan1g1969 389 PRINTS Tyrosine kinase catalytic domain signature 331 353 IPR001245 GO:0004672|GO:0006468
Lan1g1969 389 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1969 389 SMART serkin_6 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1969 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Lan1g1969 389 Coils Coil 16 36 - -
Lan1g1969 389 Pfam Protein tyrosine and serine/threonine kinase 88 360 IPR001245 GO:0004672|GO:0006468
Lan1g1969 389 PIRSF TyrPK_CSF1-R 5 156 - -
Lan1g1969 389 PIRSF TyrPK_CSF1-R 184 369 - -
Lan1g1969 389 PANTHER DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED 1 383 - -
Lan1g1969 389 Gene3D Phosphorylase Kinase; domain 1 74 169 - -
Lan1g1969 389 SUPERFAMILY Protein kinase-like (PK-like) 65 360 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1969 Lan-Chr1 34912985 34916608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1969 1 321 MAP Kinase Kinase Kinase AT5G50000 77.882 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lan1g1969 PK_Tyr_Ser-Thr 1.1e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1969 - - gmx:100807921 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0841 12 15503807 15509897 Lan1g1969 1 34912985 34916608 LSH
Lan1g1408 1 23816867 23823212 Lan1g1969 1 34912985 34916608 LSH