Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1968 ATGCATCATCACTATTTACCACGACACCGTTTCATCCACTTAGGGTTTTTTCAAATCTTACACTCTCTCAGCTATGGCTATCAGAGGTATGATGGGTTTTTCTTGTCTATGCTCGCTACCAGTGTAGTTATTGTGGCGATTAACTGGAAGCGATATCATTCTTGTATGTACCCATTGCATATATGGATTATGGTTGATTACACCGTTGTGTTTATTTTCCGGCTTCTGATGTTTGTTGATAATGGCATTGCTGCTGGAATGGGTTTAGATTTTGGGAGGCAACAGAGATATGCTCGTTTCTGTGGAAGACTAGTTGTCCTTTCAATTCTTGCAGTTCTTCTCTATCCCTTCCTTTGGGTCTGGACTATTATTGGTACACTGTGGTTCAGCCGTGACAGGGACTGTGTTCCTGAAGAGGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTTAGCTACTGTGGACTCGTTTGCATTGCTTGCATGTCGCTTGAGAAGTGGTTGACACGAAGGCAGGCACACTTATTACGTGCCCAACAGGGTATCCCTGTATCTGAATATGGGGTTCTACTTGATATGATCCGAGTGCCTGATTGGGCATTTGAGGCTGCAGGTCAAGAAGCAAGGGGTGCAAGCCAAGATGCTGGCGCATATCATCCAGGAGTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAAGCTGTTCCTACTGATTGCAATGAATGCCCCATCTGCTTAGAAGAGTTCTATCTCGGGAATGAGGTCCGTGGCCTGCCTTGCGCTCACAACTTTCATGTTGAATGCATAGATGAATGGCTTAGTCTGAATGTGAAATGCCCTCGTTGTCGTTGCTCAGTATTTCCAAATCTTGATCTTAGTGCTTTTTCCAATCTCCCTTCAGATTCTGAACGACCTTCTGCTAGTGTTGTGACAGCAACCAGATATGTGAGAGGTCAACCTTCTAGTCAAAGTTACAGGTTAAGACTACAGGGTCTTCTCCGCCCGGTGCGTGCTGAAAATGCAACGCCAGCTGTTGATACACAAAATGCTTTGGAAAATGCTGAGAATGGTGTTGCACTTGTTGTGAGTCGAAATGCTTCAAGTGGAGGCCAGGTCTCTTCTGTCGAATGCATGCCTGTCAATATTCCCTCTGCACAACATTAA 1200 0.4483 MHHHYLPRHRFIHLGFFQILHSLSYGYQRYDGFFLSMLATSVVIVAINWKRYHSCMYPLHIWIMVDYTVVFIFRLLMFVDNGIAAGMGLDFGRQQRYARFCGRLVVLSILAVLLYPFLWVWTIIGTLWFSRDRDCVPEEGQKWGFLIWLLFSYCGLVCIACMSLEKWLTRRQAHLLRAQQGIPVSEYGVLLDMIRVPDWAFEAAGQEARGASQDAGAYHPGVYLTPAQREAVEALIQELPKFRLKAVPTDCNECPICLEEFYLGNEVRGLPCAHNFHVECIDEWLSLNVKCPRCRCSVFPNLDLSAFSNLPSDSERPSASVVTATRYVRGQPSSQSYRLRLQGLLRPVRAENATPAVDTQNALENAENGVALVVSRNASSGGQVSSVECMPVNIPSAQH* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1968 399 SUPERFAMILY RING/U-box 235 303 - -
Lan1g1968 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 300 IPR013083 -
Lan1g1968 399 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 27 379 IPR044793 GO:0004842|GO:0010182
Lan1g1968 399 ProSiteProfiles Zinc finger RING-type profile. 254 295 IPR001841 -
Lan1g1968 399 Pfam Ring finger domain 252 295 IPR001841 -
Lan1g1968 399 SMART ring_2 254 294 IPR001841 -
Lan1g1968 399 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 27 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1968 Lan-Chr1 34907777 34912324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1968 77 369 C3H Transcription Factor Family AT3G47990 71.959 4.04e-154 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1968 K16284 - gmx:100812016 650.973