Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1961 TTCAATTATGCCATAATTTTGCAGAAGGAAACATGGACTGATGAAGAGGATAAGATACTGATCCAAACTCATGCAGAGATAGGAAATAAGTGGGCCGAGATTGCGAAAAGATTGCCAGGAAGAACTGAAAACTCAATCAAAAACCATTGGAATGCAACAAAAAGAAGGCAATATTCCAAAAGAAAATGCCGCTCAAAGTATCCAAGAGGCACTATTCTTCAGGACTATATCAAGAGCTTAAACTTGGACAAAAACCCTCCAATAGACTATAGAAGAAGATCTTCTGTTAATGCTATGAGATTAAAAGCTAGTGCAACCAAAGCAGCACCAGCAGCAGCTACAACTATAGCTACTCAGCCACATGGTGCAAATCAAGTTAGTCCTAATGACCGGTTGGTGCCGAATTATGAGTTCAATGAGGTCCCAGATTTTTGTTTCAATGATCATATGTTTCAAGAAGGGTGCAGCATTGATTCTTTGCTAGATGATATGCCTTGTGCTCCTACTATGAATGAGAAAGACTTTGATGGAAAAATGCAATGTGCTTCTAACATGGAGGGAAAACAAGTTGTTGATGTTGATTTTGAGACAGAGATTCCACAACAAATGGGAGGGAATGAAGTTAAGAAGGAGCTAGATTTGGTGGAAATGATGTCTCAGGTTAATCAAACCTCTAATACCTAA 684 0.3874 FNYAIILQKETWTDEEDKILIQTHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTILQDYIKSLNLDKNPPIDYRRRSSVNAMRLKASATKAAPAAATTIATQPHGANQVSPNDRLVPNYEFNEVPDFCFNDHMFQEGCSIDSLLDDMPCAPTMNEKDFDGKMQCASNMEGKQVVDVDFETEIPQQMGGNEVKKELDLVEMMSQVNQTSNT* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1961 227 Pfam Myb-like DNA-binding domain 9 51 IPR001005 -
Lan1g1961 227 SMART sant 8 56 IPR001005 -
Lan1g1961 227 CDD SANT 11 54 IPR001005 -
Lan1g1961 227 PANTHER MYB PROTEIN-RELATED 8 160 - -
Lan1g1961 227 ProSiteProfiles Myb-like domain profile. 7 54 IPR001005 -
Lan1g1961 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 58 IPR017930 -
Lan1g1961 227 Gene3D - 11 71 - -
Lan1g1961 227 PANTHER BNAC07G50190D PROTEIN 8 160 - -
Lan1g1961 227 SUPERFAMILY Homeodomain-like 8 62 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1961 Lan-Chr1 34851290 34851992 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1961 7 165 MYB Transcription Factor Family AT4G18770 55.215 3.20e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan1g1961 Myb_DNA-binding 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1961 K09422 - gmx:100816653 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0830 12 15419093 15420997 Lan1g1961 1 34851290 34851992 LSH
Lan1g1415 1 23896517 23898633 Lan1g1961 1 34851290 34851992 LSH