Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1960 ATGGACCTTGATACAGATCTTAGAGAAAACTATGCCTCACAGCCAATGCATTTGCATGAAAACTACATCAAACCCAGCATGAAAGATGAGCTTCCTTTCGTGGCTCCTTCTTCGCAGGGTTTCATGCAAGAATTTCAACATGTTGATCAGTTTCATCATGCTAATGCCTCTTCATCCAATCAAAATTTTGGGGTCCAAACTCAAAATTTTGACCCTTTTGTTGATATAACATGTGGATGTTCACAGGCAGATTTTGAAGGTTATGAGTGCAAGCCTTTTGTTGAGAATAATGGTAATGGTAACCATGTTCATGTTGTGGAAGATTTCCAATATGAAGGCTATAGTTTGAACCTCCCTAGAAGGAATCAAATGGATATGATGGCTTCAAACCAAATCTATTTGCCCTTTAATCCTTTAGAAACCAAACCTTTGAACTTTGTTGCACCTGATGAAGTCTCAAGCATATCAGCAACAAATTATTACAGAAGATTTGGCTTGAATAGAAATAATAAGACATCTCCTACCACTAGAAGGTCATGTAAAGTTAAGAAGAAGCCCAACATAGTGAAGGGGCAATGGAGTGAACATGAAGACAGATTGTTGATTCAGTTGGTGGAACAATATGGAGTGAGGAAGTGGGCTCATATTGCTCAAACCTTGCCTGGCAGAATTGGCAAACAATGCAGAGAGCGATGGCATAACCATCTAAGGCCTGACATCAAGGTTCCAATTTATTCATAA 741 0.39 MDLDTDLRENYASQPMHLHENYIKPSMKDELPFVAPSSQGFMQEFQHVDQFHHANASSSNQNFGVQTQNFDPFVDITCGCSQADFEGYECKPFVENNGNGNHVHVVEDFQYEGYSLNLPRRNQMDMMASNQIYLPFNPLETKPLNFVAPDEVSSISATNYYRRFGLNRNNKTSPTTRRSCKVKKKPNIVKGQWSEHEDRLLIQLVEQYGVRKWAHIAQTLPGRIGKQCRERWHNHLRPDIKVPIYS* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1960 246 PANTHER MYB PROTEIN-RELATED 98 243 - -
Lan1g1960 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 240 IPR017930 -
Lan1g1960 246 Pfam Myb-like DNA-binding domain 190 236 IPR001005 -
Lan1g1960 246 Gene3D - 189 241 - -
Lan1g1960 246 PANTHER BNAC07G50190D PROTEIN 98 243 - -
Lan1g1960 246 SMART sant 189 238 IPR001005 -
Lan1g1960 246 SUPERFAMILY Homeodomain-like 185 241 IPR009057 -
Lan1g1960 246 CDD SANT 193 236 IPR001005 -
Lan1g1960 246 ProSiteProfiles Myb-like domain profile. 185 236 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1960 Lan-Chr1 34849758 34850916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1960 123 246 MYB Transcription Factor Family AT4G18770 55.556 1.03e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan1g1960 Myb_DNA-binding 1.5e-16 CL0123