Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1959 ATGCAGAGTTCCACTTTCACTCTTTCCCCTTCTCTCTCCGTTTCTCACCACAAACCTCGTACACGGTTCCACCCTTCCAGAACTAACGTCAATGTCGCTTCGGTTTCTTCTTTGCCTCTGCGACCATGGTCTCTTGCTTCTTCTTCTTCTTCTTCTTCTTTCAAACTTAGACCATGGACATCTCTTAATCGGTTTGAAGCCAGAGCTACCTCCTCCGTGCCGGAGAGAGACGGCGGCGCTGCCTCTGAGTCCGGTGCTTTGTTTAGAACAGTTGAGCTTGGAGCCTTGTTTGGCATGTGGTTTATCTTCAACATCTATTTTAATATCTATAACAAACAGGTCTTGAAGGTGTACCCATTTCCATTAACTATCACTGCAATTCAATTTGCTCTGGGGACTGTCATTGTAGCAATTATGTGGGGCTTTAATCTTTATAAGAGGCCTAACATCAGTCGCGCCCAGCTTGCAGCAATATTGCCACTAGCTGTGGTGCATACTTTAGGGAACCTTTTCACCAATATGAGCCTTGGAAAGGTTGCTGTGTCTTTTACTCATACAATCAAAGCATCAGAGCCTTTCTTCTCAGTTATCCTTTCTGCTATGTTCCTTGGAGAGATGCCTACCACATGGGTGGTTGCTTCCCTTGTGCCTATTGTTGGCGGAGTGGCATTGGCATCTGCCACAGAAGCCTCTTTCAATTGGGTTGGATTTTCGAGTGCAATGGCTTCTAATTTGACCAACCAATTTCGTAACGTTCTTAGCAAAAAAGTCATGGTTAAGAAGGAGGAATCTATTGATAACATAACACTCTTCTCGATAATAACTGTCATGTCCTTCTTGTTGTCCGCACCTGTAACTATCTTCATGGAGGGTGTCAAATTTACCCCCACTTACCTGCAAGCCGCTGGATTAAACATTAACGAAGTGTATATCAGATCGCTTCTTGCTGCTCTATGTTTCCATGCGTATCAGCAAGTTTCTTATATGATACTACAAAGAGTATCACCTGTTTCCCACTCCGTAGGAAATTGTGTGAAGCGGGTTGTGGTCATTGCCAGCTCTGTCCTCTTCTTCAAAACACCTGTTTCGCCCGTTAACGCATTTGGGACTGCTATAGCTCTTGCAGGTGTTTTCCTCTATTCTAGGGTGAAAAGAATTAAGGCAAAGACAGCTTAA 1176 0.4422 MQSSTFTLSPSLSVSHHKPRTRFHPSRTNVNVASVSSLPLRPWSLASSSSSSSFKLRPWTSLNRFEARATSSVPERDGGAASESGALFRTVELGALFGMWFIFNIYFNIYNKQVLKVYPFPLTITAIQFALGTVIVAIMWGFNLYKRPNISRAQLAAILPLAVVHTLGNLFTNMSLGKVAVSFTHTIKASEPFFSVILSAMFLGEMPTTWVVASLVPIVGGVALASATEASFNWVGFSSAMASNLTNQFRNVLSKKVMVKKEESIDNITLFSIITVMSFLLSAPVTIFMEGVKFTPTYLQAAGLNINEVYIRSLLAALCFHAYQQVSYMILQRVSPVSHSVGNCVKRVVVIASSVLFFKTPVSPVNAFGTAIALAGVFLYSRVKRIKAKTA* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1959 391 MobiDBLite consensus disorder prediction 1 24 - -
Lan1g1959 391 Pfam Triose-phosphate Transporter family 92 381 IPR004853 -
Lan1g1959 391 PANTHER SOLUTE CARRIER FAMILY 35 64 366 - -
Lan1g1959 391 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 64 366 - -
Lan1g1959 391 MobiDBLite consensus disorder prediction 1 16 - -
Lan1g1959 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 309 384 - -
Lan1g1959 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 134 226 - -
Lan1g1959 391 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 92 389 IPR004696 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1959 Lan-Chr1 34844512 34848582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1959 1 389 Antiporters AT5G33320 67.805 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1959 K15283 - qsu:112040756 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1416 1 23900825 23905384 Lan1g1959 1 34844512 34848582 LSH
Lan1g1959 1 34844512 34848582 Lan15g0634 15 14430984 14434606 PCT
Lan15g0634 15 14430984 14434606 Lan1g1959 1 34844512 34848582 PCT