Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1954 ATGCTATATAGTGCTACTAACCACTTAAGAGTTCACAAAAAAACTAAGTATCATTCATTGATTAGCATTCTCTGTTTCCTCTCAGAAATGGGTCGCCATTCCTGTTGTGTAAAGCAAAAATTAAGGAAAGGTTTATGGTCCCCTGATGAAGATGAAAAGCTCTTCAATTATATAACCAGATTTGGTGTTGGATGCTGGAGTTCTGTTCCTAAACTAGCTGGGCTTCAAAGATGTGGAAAGAGTTGCAGGTTGAGATGGATAAATTATTTGAGACCTGATTTAAAGAGAGGAATGTTTTCACAGCAAGAGGAGGATCTTATAACAAGTCTCCATGAAGTCCTTGGAAACAGGTGGGCTCAGATTGCAGCACAATTACCCGGAAGAACTGACAATGAGATAAAAAACTTATGGAATTCATGTTTGAAGAAGAAGCTATTGAAACAAGGGATTGACCCAACAACACACAAGCCTCTCAATGAAGGTAATGTAAAAGAAGAGAAGACAAGCACAGAATCACTACAAAAAATGCAAATACCAATTTCTACAAGCCCTTCAGCTACACCAACCTTATTATTTTCATCACAATGTTCGCCACTTCGAATAAGCGACTCAAATTCCTATGATGATGGAAGGTTAGCAGAAGAAGCATCAAGAGAAATTTTCATGAGCAAGCAAGTATTAGACCCTTTATCTTACTATGATAATTTCCAAATGAGTGTTGCACAAAACTCTTGTTATGGTTTACCTGTGAGTAGTAGTTATCAAACAAGCATTAGAACATTGTTTGATCAGAACCAGTTTGGAACAAATCCAAGCTATGGATTCTCTTCAATGCCAAGTCTAACCAATTCAGATCATGTGTCGGTGACAGAGTTTTCTTCAGATAACAACCCAAGTTCTAAAATCAGTTCCTTGTTCATGAATGATAATAATCAACATTATTCAAATAGTAACCTGTCATTCGACGAATTAAGTAAAAAACAACATTTCGAGATTTGA 999 0.3644 MLYSATNHLRVHKKTKYHSLISILCFLSEMGRHSCCVKQKLRKGLWSPDEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLITSLHEVLGNRWAQIAAQLPGRTDNEIKNLWNSCLKKKLLKQGIDPTTHKPLNEGNVKEEKTSTESLQKMQIPISTSPSATPTLLFSSQCSPLRISDSNSYDDGRLAEEASREIFMSKQVLDPLSYYDNFQMSVAQNSCYGLPVSSSYQTSIRTLFDQNQFGTNPSYGFSSMPSLTNSDHVSVTEFSSDNNPSSKISSLFMNDNNQHYSNSNLSFDELSKKQHFEI* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1954 332 CDD SANT 46 90 IPR001005 -
Lan1g1954 332 PANTHER MYB DOMAIN PROTEIN 55 30 318 - -
Lan1g1954 332 Gene3D - 40 96 - -
Lan1g1954 332 SUPERFAMILY Homeodomain-like 41 137 IPR009057 -
Lan1g1954 332 PANTHER MYB TRANSCRIPTION FACTOR 30 318 - -
Lan1g1954 332 ProSiteProfiles Myb-like domain profile. 38 90 IPR001005 -
Lan1g1954 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 94 IPR017930 -
Lan1g1954 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 145 IPR017930 -
Lan1g1954 332 SMART sant 95 143 IPR001005 -
Lan1g1954 332 SMART sant 42 92 IPR001005 -
Lan1g1954 332 Pfam Myb-like DNA-binding domain 96 140 IPR001005 -
Lan1g1954 332 Pfam Myb-like DNA-binding domain 43 90 IPR001005 -
Lan1g1954 332 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Lan1g1954 332 CDD SANT 99 138 IPR001005 -
Lan1g1954 332 Gene3D - 98 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1954 Lan-Chr1 34790012 34803882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1954 30 170 MYB Transcription Factor Family AT1G57560 79.433 3.60e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan1g1954 Myb_DNA-binding 6.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1954 K09422 - gmx:100811140 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0815 12 15270274 15272223 Lan1g1954 1 34790012 34803882 LSH
Lan1g1433 1 24169409 24171284 Lan1g1954 1 34790012 34803882 LSH