Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1952 ATGACAACCAGGTTCAAGAAGAACAGGAAGAAGAGAGGCCACGTCAGCGCCGGTCACGGTCGTATCGGAAAGCACCGCAAACATCCCAGCGGTCGAGGTAACGCCGGTGGCATGCACCACCACCGCATCCTCTTCGATAAGTACCATCCAGGTTACTTCGGTAAGGTTGGTATGCGCTATTTCCACAAGCTTCGTAACAAGTTCTATTCCCCAATCGTCAACATCGATAAGCTATGGTCACTGGTTCCTCAAGAGGTGAAGGATAAGGCGGCGAAGGAACCGGGTAAGGCACCGTTGATCGATGTTACGCAGTTCGGGTACTTTAAGGTTTTGGGGAAAGGTGTTTTGCCTGAGAACCAACCTATTGTGTTGAAGGCCAAGCTCGTTTCGAAGATTGCGGAGAAGAAGATTAAGGAGGCTGGTGGAGCAGTTGTTCTCACTGCTTGA 447 0.5078 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPSGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYSPIVNIDKLWSLVPQEVKDKAAKEPGKAPLIDVTQFGYFKVLGKGVLPENQPIVLKAKLVSKIAEKKIKEAGGAVVLTA* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1952 148 Hamap 50S ribosomal protein L15 [rplO]. 1 147 IPR030878 GO:0003735|GO:0006412|GO:0015934
Lan1g1952 148 MobiDBLite consensus disorder prediction 1 35 - -
Lan1g1952 148 ProSitePatterns Ribosomal protein L15 signature. 109 141 IPR001196 GO:0003735|GO:0005840|GO:0006412
Lan1g1952 148 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 148 - -
Lan1g1952 148 Gene3D - 58 148 - -
Lan1g1952 148 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 1 148 - -
Lan1g1952 148 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 29 145 IPR021131 -
Lan1g1952 148 MobiDBLite consensus disorder prediction 1 37 - -
Lan1g1952 148 SUPERFAMILY Ribosomal proteins L15p and L18e 6 147 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1952 Lan-Chr1 34774347 34775034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1952 1 148 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 85.135 1.41e-89 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1952 K02900 - gmx:100802235 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0813 12 15261114 15261838 Lan1g1952 1 34774347 34775034 LSH
Lan1g1434 1 24192958 24193510 Lan1g1952 1 34774347 34775034 LSH