Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1951 ATGAACCACTTCGACAACAGATATTCCGACGCCACTTCTTATCGTAACCGTCGCTCTGATCTAGTTGGATCTATGCCTCCTCCTGCTGCAACATACGGCCGTGGTGCTCCTGCTCCATACGGTGGTCCTCCGGTGTCGTATTCGTCTGGAAGAGGAGCACCTAATGGTTATGGATCCGGACCTGCTCCCCCGGTTTCGCCATTTATACCGCCTTCGGGTGGTTTTAATATCGGTCGAGGGGGTGGTTTTGGTGATAGATTTGGTAATGGTCATTTAGGCGATAGAAGGGATGACATAGGTCGTCATGGTGGTGGTGGTGGAAGAGGGCGTGGTGGTTTTAGCTCTGGCCATGGCGGTGGTAGAGGTGGGAATTATGGTTTTAGGGGCTCCGGGAGAGGAGGGATGGGAGGTAGAAGTTATGGTAGTGGTGGTGGTCGCGGTGGTAGACATGGTGGTTCGTCTAAGGGTGATTTGGATAATATTTCTCTCCCAAGGCAGGATTTTAGAAATTTGGTGCCTTTTGACAAGAATTTTTACGTTGAAAGCCATTCAGTGAGTGCTATGTCCGAGCAAGAAGTTATGCATTACCGTGCTACTAGAGAAATCACTGTGCAAGGGAATGATGTGCCAAGACCGATTCGAACATTTCAGGATGCAAATTTTCCTGGTTATTGCATGGATGTCATTGCCAATTTGGGTTTTGTCGAGCCAACTGCAATTCAGGCTCAGGGTTGGCCCATGGCTCTGAAGGGTAGAGACTTGATTGGCATTGCTGAGACTGGATCCGGTAAAACATTGTCATATCTGCTTCCTGCTTTTGTGCATATCAGTGCTCAACCTCGACTGTCACCAGGTGATGGTCCTGTTGCATTAGTTTTAGCACCAACTAGAGAGTTAGCTGTACAAATTCAAGAAGAAGCTCTGAAATTTGGGGCACGAACACATATTAGAAGTACATGCATCTATGGTGGTGCACCAAAGGGCCCTCAAATTCGCGACCTGAGAAGAGGTGTTGAGATTGTTATTGCTACACCTGGTCGACTAATAGATATGTTGGAAGCTCAGCACACAAACTTGAAGAGAGTTACTTACCTTGTCTTGGATGAAGCTGATCGAATGTTGGACATGGGTTTTGAGCCTCAGATACGGAAAATTGTTGGCCAGATTCGACCAGATAGGCAGACATTGTATTGGAGTGCTACATGGCCAAGGGAGGTTGAAAAGCTGGCAAGGCAGTTTCTGCGCAACCCATATAAGGTAATTATTGGATCAGCTGAACTGAAAGCAAATCAATCTATAAATCAAATTGTCGAAATTATTACTGATATGGAGAAATACAATAGGTTGATCAAACTGCTGAAAGAAATGATGGATGGTAGCCGAATCCTAATATTTATGGAAACAAAAAAGGGCTGTGACCAAGTTACAAGACAATTGAGAGTAGATGGATGGGCAGCGCTGTCCATCCACGGTGATAAAAACCAGTCCGAAAGGGACTGGGTTTTGGCTGAATTTAAGAGTGGTAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATAAAATGTGTGATCAATTATGATTTTCCCACCAATCTGGAAGATTATGTCCACAGAATTGGCCGAACTGGTCGTGCTGGGGCTAAAGGAACTGCATACACCTTTTTTACACATTCCAATGCCAAGTTTGCTAAGGAGCTGATCAAGATTTTACAAGATGCTGGCCAGGTCGTGAATCCCGCGTTGATTGCTTTAGCCCGGACAGCTGGTTCTGGTCAATTTGGATCCGGAGGAGGCTTTCGCTCCAGAGGTCGAGGAGGCTATGGCAATCGGTCAGGATCAAATGCCGTTCCAGTAGGTTTTAAGAGGCATTGGTAG 1899 0.4623 MNHFDNRYSDATSYRNRRSDLVGSMPPPAATYGRGAPAPYGGPPVSYSSGRGAPNGYGSGPAPPVSPFIPPSGGFNIGRGGGFGDRFGNGHLGDRRDDIGRHGGGGGRGRGGFSSGHGGGRGGNYGFRGSGRGGMGGRSYGSGGGRGGRHGGSSKGDLDNISLPRQDFRNLVPFDKNFYVESHSVSAMSEQEVMHYRATREITVQGNDVPRPIRTFQDANFPGYCMDVIANLGFVEPTAIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHISAQPRLSPGDGPVALVLAPTRELAVQIQEEALKFGARTHIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPREVEKLARQFLRNPYKVIIGSAELKANQSINQIVEIITDMEKYNRLIKLLKEMMDGSRILIFMETKKGCDQVTRQLRVDGWAALSIHGDKNQSERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPTNLEDYVHRIGRTGRAGAKGTAYTFFTHSNAKFAKELIKILQDAGQVVNPALIALARTAGSGQFGSGGGFRSRGRGGYGNRSGSNAVPVGFKRHW* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1951 632 Gene3D - 176 424 IPR027417 -
Lan1g1951 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 286 571 IPR027417 -
Lan1g1951 632 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 245 420 IPR014001 -
Lan1g1951 632 Gene3D - 425 593 IPR027417 -
Lan1g1951 632 CDD SF2_C_DEAD 433 563 - -
Lan1g1951 632 MobiDBLite consensus disorder prediction 89 104 - -
Lan1g1951 632 CDD DEADc_DDX5_DDX17 226 420 - -
Lan1g1951 632 MobiDBLite consensus disorder prediction 601 622 - -
Lan1g1951 632 PANTHER LD32873P 167 614 - -
Lan1g1951 632 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 366 374 IPR000629 -
Lan1g1951 632 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 167 614 - -
Lan1g1951 632 SMART helicmild6 473 554 IPR001650 -
Lan1g1951 632 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 214 242 IPR014014 GO:0003724
Lan1g1951 632 Pfam DEAD/DEAH box helicase 238 409 IPR011545 GO:0003676|GO:0005524
Lan1g1951 632 Pfam Helicase conserved C-terminal domain 444 554 IPR001650 -
Lan1g1951 632 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 448 593 IPR001650 -
Lan1g1951 632 MobiDBLite consensus disorder prediction 1 162 - -
Lan1g1951 632 SMART ultradead3 233 436 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1951 Lan-Chr1 34767321 34773053 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1951 201 583 Eukaryotic Initiation Factors Gene Family AT3G19760 34.805 1.31e-67 224