Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1948 ATGGAACACAAACCCAAACCTAATTCTAATGCTAAGTTCCTCTGTAGCTACGGTGGGAAAATCCTCCCACGCGCCACCGACGGCGAACTTCGCTACTCCGGCGGCCACACCAGAGTCCTTGCCGTCGATCCTTCCGTCTCTTTCTCAGAGTTGATAGTGAAGGTTAGTGACTTATGCGGTTACTCAGTTACCTTGAAGTGTCCGTTACCTAACGGAAACTTGGAGACGTTGATTTCTATCACAAGCAACGAAGATTTGGCTAATATAATTGAGGAATATGATCGAGCTTCGTTGTCGTTAACTCATCCGTTGAAAATCAGAACCATTCTTTCGCCGTTGAAGAAACTGTCTCCGTCTCCGTCTTCTTCCTCTTCCGGATCACCGCCGTATGCGGTGGCGGGTCAGATTATTCGCCGGAACTGCTTGCCGGCTGGGTATCAAAATGGTTTCGGTTATGGCTCGGTGAATTTTGGAAGCCCCAGATTCCTTAATCGGGGGCTCCACTATTGTAATTACTGCCACTGA 525 0.4857 MEHKPKPNSNAKFLCSYGGKILPRATDGELRYSGGHTRVLAVDPSVSFSELIVKVSDLCGYSVTLKCPLPNGNLETLISITSNEDLANIIEEYDRASLSLTHPLKIRTILSPLKKLSPSPSSSSSGSPPYAVAGQIIRRNCLPAGYQNGFGYGSVNFGSPRFLNRGLHYCNYCH* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1948 174 PANTHER PB1 DOMAIN PROTEIN 1 174 - -
Lan1g1948 174 SUPERFAMILY CAD & PB1 domains 27 99 - -
Lan1g1948 174 Gene3D - 31 110 - -
Lan1g1948 174 CDD PB1_UP2 14 97 - -
Lan1g1948 174 Pfam PB1 domain 29 96 IPR000270 GO:0005515
Lan1g1948 174 PANTHER OS05G0427100 PROTEIN-RELATED 1 174 - -
Lan1g1948 174 SMART PB1_new 25 111 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1948 Lan-Chr1 34743713 34744748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1948 11 95 MAP Kinase Kinase Kinase AT3G46920 45.882 1.10e-22 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1948 - - gmx:100797123 172.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1435 1 24205374 24206706 Lan1g1948 1 34743713 34744748 LSH
Lan1g1948 1 34743713 34744748 Lan15g0620 15 13947612 13948675 PCT
Lan15g0620 15 13947612 13948675 Lan1g1948 1 34743713 34744748 PCT