Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1942 ATGGCGGACCCGGAGGTTTTGCCATGGCTGAAATCGCTTCCACTCGCTCCAGAATACAGACCAACCGCTTCAGAGTTTCAAGATCCAATTGCTTACATTTTCAAGATCGAGAAAGAAGCTTCTAGATACGGAATCTGTAAGATCATTCCTCCGCTTCCACCTTCTCCTAAGAAAACCGCTATTTCCAACCTCAACCGCTCTCAACCGTCTTTCACGACGCGCCAGCAGCAGATCGGCTTCTGCCCCCGCCGTCCTCACCCCGTCCGCCGCCCTGTCTGGCAGAGTGGGGGCCACTACACCTTCAAAGAGTTCGAAGCCAAAGCCAAAGCATTCGAGAAAACCTATCTCAAGAAACACTGTTCAAGCAAGAGTAATAACGTTGTTGCTCCTTCTGCGCTTGAGGTTGAAACTCTGTATTGGAAGGCCACGTTGGATAAACCGTTTTCCGTTGAGTATGCCAACGACATGCCCGGTTCGGCTTTCGGTCCAGCGAGTAATGGAGGTGAGAGTGTGGGTGACAGTGCTTGGAACATGAGAGTGGTTTCGAGGGCGAATGGGTCGTTGTTGAGGTTTATGAAGGAAGAGATTCCTGGTGTTACTTCACCAATGGTTTATGTGGCTATGTTGTTTAGTTGGTTTGCTTGGCATGTTGAGGATCATGATTTGCATAGTCTTAATTATCTTCATTTGGGTACTTCAAAGACTTGGTATGGTGTCCCTAGAGATGCTGCATTTGCGTTTGAAGAAGTTGTTCGAGTTCATGGATATGGTGGAGAGATTAACCCTCTTGTTACTTTTGCTATCCTTGGTGAGAAAACTACAGTGATGTCGCCGGAAATATTTATTGGTGCAGGTGTTCCGTGTTGCAGGTTAGTTCAAAATGCTGGGGAATTCGTTGTGACATTCCCAGGAGCCTATCACACAGGATTTAGTCATGGTTTTAATTGTGGAGAGGCATCTAACATTGCGACACCCGAATGGTTGAGGGTGGCTAAAGATGCTGCTATTCGCAGGGCTTCGATAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGGCCTTGCTTTGTGCTCTAGACTCCCTGGGGGCATCAGTGCTGAACCACGCAGTTCTCGACTTAAAGATAAGAGAAAAGGTGAAGGAGAAACTGTAATCAAAGAGTTATTTGTACATGACGTGCTACAGAACAATGGTTTGCTTCATGTACTCGGCAAAGGCTCTGCTATAGTACTTCTTCCTCATAGCTCTTCTGATTTTTCTGCTTGCTCAAAATTACGTGTTGGGTCCCAACAACTAAACCCTGAGTCCATGGACGTAAGCAATCCGAAGGGAATAAATTCTTCAAAGGGTTTGATTTCTGATGACCTGGCTTTTGTCACTAATCATGGAATCAGGCAAGTAAAAGGTTTTTATTCTGTAAAAGAAAAGTTTGGTACGCTGTGGGATTCCTCATTGATTGTGGGTGGTAACATATGCACTTCAAGTTCAAAGACACTACAAAAAGACACTGAAAGAGAAACAAATCAAGGAGATGGGTTGTCGGATCAGAGACTATTTTCATGTGTCACATGTGGAATATTAAGCTTTGCATGTGTTGCTATTGTACAGCCTAGAGAACCTGCAGCTAGATCCCTTATGTCAGCTGATTACAGTTTCTTTAATGATTCGATTGTTGGTTCTGGATTAACTAGCAATAACTTCACTGTTGCCCATGAAGGATGGACAGAGCAGAATGCCCATGAAGATTTATATGATGCTCCTGTTCAATCTATCAAACAACAGACACAGATTGCTGATCAAAATTATGTAGAGGCTTTAAATACCGAACAAAGAAAAGGCAGTACAGCTCTTTCGTTATTGGCTTCAGCATATGGAGATTCCTCTGACTCTGAGGAAGATAAGGGTGAATCAGATATTGCAGTTGAAGGTGATGAGTTGAACATGATTAATCATCCATCAGCAATTAGATCTAAGGAGATATCCTGTTTGCCTTCTCACACTCAAGATTGTCATGCCAGTCCAGGGGTTAGACTTGATAGAGGAGGTGATATTCCTTCGAATAGTACTGAAAGTTATGAGGATTATATGCATAAGAGGGTTGAGCACATTATGAGTCCTTCTGACTACTCTGTTAAGTCAGAAGATTATGACATCACTTCAGGGGTTGCATTTAAAAATATGGCGGCAGTGCGTCATTCCATGTCAAATTGTTCCCAAGATGCTGAAACATCACTGTTAGGCAAGGCTGTGGTTCCTATCGATAAACATGTTTCATTGGTTCCACTGTCTGATGAAGACTCATCCAGAATGCATGTCTTTTGCCTAGAGCATGCTGTAGAAGCAGAGAAGCAACTTCGCCCTATAGGAGGAGCACACATATTACTTCTATGCCATCCAGATTATCCCAAAATAGAGGCTGAAGCTAAGTTTGTGGCAGAAGAACTGGGTATTGATTACACGTGGAAGAATACTGCATACAGGCATGCTAATAAAGATGATGAGGAAAAGATCCAATCAGCTCTAGACAGCGAGGAAGCTACTCCTGGGAATGGGGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGTCGCTCTCCACTTTATAGCAAGCAGATGCCTTACAATTCTGTTATTTATTATGCATTTGGTTGTAGCTTTCCAGCAAGCTCACCCACAGAACCCAAGGTCTATCGGAGAAGGGGCAACAGGCAGAAAAAGGTAGTTGCTGGTAAGTGGTGTGGTAAAGTTTGGATGTCCACTCAAGTCCATCCCCTTTTAGTAAAAGGAGATGCTGAGGATGTTGTGGATGAGAAAAGCTTACATGGGTGGCCATTACATGATGAGAAAATGGAGAGATCAGAAGGCACCTACAAAAGCAACACTATTATAAACTCTGGTAGAAAAAGGAAAATGGCTGTGGAGAGTGGTGGATCCAGGAAAGGAAGTTTTGCCAAGAGTGATTGTCTTTCAGATGATTCAATTGAAGATAAATCGAATCACCCCAAAAGGAGGATTCTTAGAAGTAAGAGAACCAGACATATTGAGAAAGATGACACAGTTTCAGAGGGGGATTATTCTCCTCTGAAGCATCATAGGAGGCCTATATGCAAGCATACAAAAGGCATTGAAAGTGATGCAATTTCAGATGATTCGCTGGATGATAATTCTCATATACAGCTTAGGAAGAATGTTAATGCCAAGGAAGCTGAATTTATTGAGAACGATGTGGTTTCAGATGATACAGTGGGCGATGATTTTGATTGCTCGCCCAGGGAAGAGCTTAGCAGCAAGCAAGAGGCAATTTCAGAGGATTCATTGGGTGTTGGTTCTCTTCAGCTGCATAGAAAAACTTCTAAAAGCAAGCATGGCAAATACATTGATGAAGATGTGATTTCTGATGATGACCGAATGGAGGTTTGTTTTCAGAAGCAGCAGAGGAGGAAACCTAAAACAAAGCAACGCAAATGCCTTGCTGAAAACATTACAATGGCATCTGATGACCAACTCGAGCACCACATGCGAAAGCAGCAACAAAAGAATCCTAAAAGCAAACAAGATAAATACCTTGCTGGAGAGGATATTATATCTGATGACCAATTGGAGCTTCATTCTCACAAGTATCCAAGAAGGACTCCTAAAAACAAGCAAGCCAAGTGCATTGTTGGGAAAGATGTAATGTCCGATGGTCAGTTGGAGAAGCAGCGAAGGAGTGTTCCTAGGAGCAGGCAAATCAAATGTTGTGATAGAGAAATTATGGATGACTCGGCTGAAAATAATTCTCATCTGCTGTGTAGAACTCCTAAAAGAAGGCAACCTAAATGTATTAATGAAGACAATATAAATTCAGATGATCAAATGGAGGATGAATCTCTGCAGCATAGGAGAACTGTTCGTGGTAAGCAATCTAAATCACGGACTCTTCAACACATGAAACAAGCCAAATGCAAGGATGAAGACAGTGCAAATTCAGATGATCAAATGGAGGATGATTCTCAGCAGCATAGTAGAACTGTTCGAGGTAAGAAATCTAAACCACAGACTCTTCAACAGATGAAACAAGCTAAATGGAAGGATGAAGAGGATATAAATTCAGATGATCAAATAGAGGATGATTCTCAGCAGCATAGGAAAACTGTCCGAGGTAAGAAATCTAAATCACAGATTCTTCAAAAAATGAAACAAGCTAAATGGGAGGCTGAAGACAATATAAATTCAGAGTACCAAATGGAGGATGATTGTCAGAAGAACAGGAAAACTGTTCGGAGTAAGCAATCTAAATCGCAGACACTGCAACAAATGAAACAAGCTAACTCTGTCCGTGTGAGAAGGCCGGCATCTCAACCTGTGAAGAGAGGGGCCCAGACACGAATGAAATCGAAGACTCCTCGGAAAATGAAGCAGCTACCTCGTGTGCAGAATAATCAATCTGAAGAAGAGGAAGAGGAGGAGGATGTGGAGGGGGAGGGAGATGGAGAGGAGGAGGAAGTAGAAGTAACTGGACCTAGCACACGCCTTAGGAAGAGAGTCCCAAAATTTGAGGAGTCTGAAGGAAAATCAAAAGAAAAGGAAACCAAAAGGAACAGTGTGAAGAGTGCTACAACTGCAAAGATTTCAGCTCGGCATGCCAAAATTAAGGAGGAGGTAGCAGAATACCAGTGTGACATTGAGGGGTGTACAATGAGTTTTGGGTCTAAACTGGAGCTGATGCAACATAAGAAAAATATTTGTCCTGTGAAGGGATGTGGCAAGAAGTTTTTCTCACACAAATATCTGGTTCAGCATCGCCGTGTTCATGAGGATGACCGCCCCTTGAAGTGTCCTTGGAAGGGGTGCAAGATGACTTTCAAATGGGCATGGGCTCGCACGGAACATATACGAGTCCACACTGGTGAACGTCCTTATGTATGTGCCGAGCCAGGTTGTGGGCAAACATTCAGATTTGTTTCTGATTTCAGTCGTCACAAGCGGAAGACTGGTCATACAACAAAGAAGAGTTGTTAA 5028 0.429 MADPEVLPWLKSLPLAPEYRPTASEFQDPIAYIFKIEKEASRYGICKIIPPLPPSPKKTAISNLNRSQPSFTTRQQQIGFCPRRPHPVRRPVWQSGGHYTFKEFEAKAKAFEKTYLKKHCSSKSNNVVAPSALEVETLYWKATLDKPFSVEYANDMPGSAFGPASNGGESVGDSAWNMRVVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHLGTSKTWYGVPRDAAFAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEIFIGAGVPCCRLVQNAGEFVVTFPGAYHTGFSHGFNCGEASNIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLGLALCSRLPGGISAEPRSSRLKDKRKGEGETVIKELFVHDVLQNNGLLHVLGKGSAIVLLPHSSSDFSACSKLRVGSQQLNPESMDVSNPKGINSSKGLISDDLAFVTNHGIRQVKGFYSVKEKFGTLWDSSLIVGGNICTSSSKTLQKDTERETNQGDGLSDQRLFSCVTCGILSFACVAIVQPREPAARSLMSADYSFFNDSIVGSGLTSNNFTVAHEGWTEQNAHEDLYDAPVQSIKQQTQIADQNYVEALNTEQRKGSTALSLLASAYGDSSDSEEDKGESDIAVEGDELNMINHPSAIRSKEISCLPSHTQDCHASPGVRLDRGGDIPSNSTESYEDYMHKRVEHIMSPSDYSVKSEDYDITSGVAFKNMAAVRHSMSNCSQDAETSLLGKAVVPIDKHVSLVPLSDEDSSRMHVFCLEHAVEAEKQLRPIGGAHILLLCHPDYPKIEAEAKFVAEELGIDYTWKNTAYRHANKDDEEKIQSALDSEEATPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGCSFPASSPTEPKVYRRRGNRQKKVVAGKWCGKVWMSTQVHPLLVKGDAEDVVDEKSLHGWPLHDEKMERSEGTYKSNTIINSGRKRKMAVESGGSRKGSFAKSDCLSDDSIEDKSNHPKRRILRSKRTRHIEKDDTVSEGDYSPLKHHRRPICKHTKGIESDAISDDSLDDNSHIQLRKNVNAKEAEFIENDVVSDDTVGDDFDCSPREELSSKQEAISEDSLGVGSLQLHRKTSKSKHGKYIDEDVISDDDRMEVCFQKQQRRKPKTKQRKCLAENITMASDDQLEHHMRKQQQKNPKSKQDKYLAGEDIISDDQLELHSHKYPRRTPKNKQAKCIVGKDVMSDGQLEKQRRSVPRSRQIKCCDREIMDDSAENNSHLLCRTPKRRQPKCINEDNINSDDQMEDESLQHRRTVRGKQSKSRTLQHMKQAKCKDEDSANSDDQMEDDSQQHSRTVRGKKSKPQTLQQMKQAKWKDEEDINSDDQIEDDSQQHRKTVRGKKSKSQILQKMKQAKWEAEDNINSEYQMEDDCQKNRKTVRSKQSKSQTLQQMKQANSVRVRRPASQPVKRGAQTRMKSKTPRKMKQLPRVQNNQSEEEEEEEDVEGEGDGEEEEVEVTGPSTRLRKRVPKFEESEGKSKEKETKRNSVKSATTAKISARHAKIKEEVAEYQCDIEGCTMSFGSKLELMQHKKNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGERPYVCAEPGCGQTFRFVSDFSRHKRKTGHTTKKSC* 1676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1942 1675 MobiDBLite consensus disorder prediction 1432 1451 - -
Lan1g1942 1675 ProSiteProfiles JmjC domain profile. 170 339 IPR003347 -
Lan1g1942 1675 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 1355 1666 - -
Lan1g1942 1675 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 4 1326 - -
Lan1g1942 1675 Pfam JmjC domain, hydroxylase 203 321 IPR003347 -
Lan1g1942 1675 MobiDBLite consensus disorder prediction 1282 1548 - -
Lan1g1942 1675 ProSitePatterns Zinc finger C2H2 type domain signature. 1615 1637 IPR013087 -
Lan1g1942 1675 SMART JmjN_1 15 56 IPR003349 -
Lan1g1942 1675 MobiDBLite consensus disorder prediction 1091 1115 - -
Lan1g1942 1675 MobiDBLite consensus disorder prediction 1362 1386 - -
Lan1g1942 1675 MobiDBLite consensus disorder prediction 1020 1039 - -
Lan1g1942 1675 Pfam jmjN domain 17 50 IPR003349 -
Lan1g1942 1675 MobiDBLite consensus disorder prediction 670 689 - -
Lan1g1942 1675 ProSitePatterns Zinc finger C2H2 type domain signature. 1585 1607 IPR013087 -
Lan1g1942 1675 SUPERFAMILY Clavaminate synthase-like 82 339 - -
Lan1g1942 1675 SUPERFAMILY beta-beta-alpha zinc fingers 1584 1616 IPR036236 -
Lan1g1942 1675 SUPERFAMILY beta-beta-alpha zinc fingers 1623 1667 IPR036236 -
Lan1g1942 1675 MobiDBLite consensus disorder prediction 976 1041 - -
Lan1g1942 1675 MobiDBLite consensus disorder prediction 994 1011 - -
Lan1g1942 1675 ProSiteProfiles Zinc finger C2H2 type domain profile. 1583 1612 IPR013087 -
Lan1g1942 1675 MobiDBLite consensus disorder prediction 1506 1538 - -
Lan1g1942 1675 PANTHER LYSINE-SPECIFIC DEMETHYLASE 4 1326 - -
Lan1g1942 1675 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1355 1666 - -
Lan1g1942 1675 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Lan1g1942 1675 ProSiteProfiles Zinc finger C2H2 type domain profile. 1643 1674 IPR013087 -
Lan1g1942 1675 ProSiteProfiles Zinc finger C2H2 type domain profile. 1613 1642 IPR013087 -
Lan1g1942 1675 ProSitePatterns Zinc finger C2H2 type domain signature. 1645 1669 IPR013087 -
Lan1g1942 1675 SMART cupin_9 170 339 IPR003347 -
Lan1g1942 1675 SMART c2h2final6 1560 1582 IPR013087 -
Lan1g1942 1675 SMART c2h2final6 1583 1607 IPR013087 -
Lan1g1942 1675 SMART c2h2final6 1643 1669 IPR013087 -
Lan1g1942 1675 SMART c2h2final6 1613 1637 IPR013087 -
Lan1g1942 1675 MobiDBLite consensus disorder prediction 1174 1216 - -
Lan1g1942 1675 MobiDBLite consensus disorder prediction 1237 1251 - -
Lan1g1942 1675 MobiDBLite consensus disorder prediction 1319 1346 - -
Lan1g1942 1675 MobiDBLite consensus disorder prediction 1173 1251 - -
Lan1g1942 1675 MobiDBLite consensus disorder prediction 1093 1108 - -
Lan1g1942 1675 MobiDBLite consensus disorder prediction 1485 1505 - -
Lan1g1942 1675 Gene3D Classic Zinc Finger 1581 1669 - -
Lan1g1942 1675 Gene3D Cupin 9 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1942 Lan-Chr1 34669731 34678070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1942 1406 1674 C2H2 Transcription Factor Family AT3G48430 46.831 2.47e-67 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan1g1942 JmjC 8.7e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1942 - - lang:109362418 3306.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1458 1 24593332 24605785 Lan1g1942 1 34669731 34678070 LSH
Lan1g1942 1 34669731 34678070 Lan17g0134 17 799093 815183 PCT