Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1936 ATGGCGGCAGGGCGAAAAAGTGTTGTGAGGAAAAGTGATTCTTTGGTGAATGGTTCTTTCAAGGAACATAGGAATGATTCTTATGGCATGAAAGTTGACGAATCTTACAACTTCCATGCCACCCGCTCTGCAAAGCAAGTGTTTCATGTTGGGAAAGAGGAGAGAGAAGAAGGTGAGCTCTGTTTTGAACATGGGGAAGCTGATATGGGTGAAGTTCTCCCACCGCCGGAGAAGAAGAAAAAGATCTCACCAATTGTATGGGATCTAGCTGAGGAGAATGGTGTGGAAGATGTGGATGAGGATGAAGAGAACAAAGTGAAGGGATGGAACATCACAATGTCAAGATGGGCTTCTGATGGTCTTTCACCAATGAGCACTGATGATAAATCCAAAGGTCTCAAAGTAATTTCAAGTGTTGAGACTGATGAATTCCAAAGAGAACTTTCAGAAAGTACAATCACTAGATCATCAGGAAGTTGTGGAAGAGATAATTGTCTGGGCCGTTCAACATCTGATTCTGTTTCTGATAAGGAGTTCTGTAGTGACTCCATTTATGGTAATGGAGAACAAAGTGACGTGAGTGATTCTCCTGATTCCGACGAAGACAGTGGTTTAGTAGATGTGCGGACAGATAGAAACATGTTTCAGAGCTGCAGAAGCATATGTGAGTTTGAAATGATTAAGAAGATAAATGAGGGCACTTATGGTGTTGTCTATAAAGCTAGGGATAAGAAGACGGGTGAAATAGTAGCAATAAAGAAGGTGAAGATGAACATAAGTAGGGATGGCTTTCCAGTGTCAGCGTTGCGGGAAATGAACATTCTGTTGTCTTTTAATCATCCTTCTATTATTGATGTTAAAGAAGTTGCTGTTGATGATTATGATGGTACTTTTATGGTAATGGAGTACATGGAGCATGACCTTAAGGAGCTGATGAAGGAAAAAAAGCAGCCCTTTAGTATAGGTGAAATAAAATCTATGATGAAGCAACTTCTTGAAGGTGTCAAATATATCCACGACAACTGGGTTATCCATAGGGATTTGAAGACATCAAATATTCTGCTGGACAATGAAGGGCACCTTAAAATATGCGACTTTGGTTTGTCCCGCCAGTATGGAAGTCCACTGAAGCCATATACTCCTGTTGTTGTTACACTATGGTATAGGGCACCTGAACTTTTGTTAGGCGCGAAGGAATATTCAACAGCAATTGACATGTGGTCAGTGGGTTGCATAATGGCTGAGTTAATTTCAAAGGAAGCCCTTTTTGCCGGGAAATCTGAAGTGGAACAACTTGATAAGATTGTCCGGACCCTGGGCACGCCAGATGAGAAAATTTGGCCTGGGTTATCCAAATTACCTGGTTCTAAAGGAAAATTTGTTAAGCAACCGTATAGTATATTAAGGAGAAAGTTTCGAGCCTCATCTTTCATAGGTTTGCCGGTTCTGTCTGAGCTGGGATTTGACTTGCTAGAGAAGCTTCTAACTTACGACCCTGAAAAGAGGATAACTGCAGAAGATGCTCTCCTTCATGATTGGTTTCATGAAGCCCCCCTTCCCAAATCTGATTTCAACCCGATTCTTCCTTCTTGGCGTGGCTAG 1602 0.417 MAAGRKSVVRKSDSLVNGSFKEHRNDSYGMKVDESYNFHATRSAKQVFHVGKEEREEGELCFEHGEADMGEVLPPPEKKKKISPIVWDLAEENGVEDVDEDEENKVKGWNITMSRWASDGLSPMSTDDKSKGLKVISSVETDEFQRELSESTITRSSGSCGRDNCLGRSTSDSVSDKEFCSDSIYGNGEQSDVSDSPDSDEDSGLVDVRTDRNMFQSCRSICEFEMIKKINEGTYGVVYKARDKKTGEIVAIKKVKMNISRDGFPVSALREMNILLSFNHPSIIDVKEVAVDDYDGTFMVMEYMEHDLKELMKEKKQPFSIGEIKSMMKQLLEGVKYIHDNWVIHRDLKTSNILLDNEGHLKICDFGLSRQYGSPLKPYTPVVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMAELISKEALFAGKSEVEQLDKIVRTLGTPDEKIWPGLSKLPGSKGKFVKQPYSILRRKFRASSFIGLPVLSELGFDLLEKLLTYDPEKRITAEDALLHDWFHEAPLPKSDFNPILPSWRG* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1936 533 MobiDBLite consensus disorder prediction 144 206 - -
Lan1g1936 533 Gene3D Transferase(Phosphotransferase) domain 1 306 525 - -
Lan1g1936 533 MobiDBLite consensus disorder prediction 150 193 - -
Lan1g1936 533 ProSiteProfiles Protein kinase domain profile. 224 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1936 533 SMART serkin_6 224 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1936 533 PANTHER CELL DIVISION PROTEIN KINASE 145 532 - -
Lan1g1936 533 Pfam Protein kinase domain 224 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1936 533 SUPERFAMILY Protein kinase-like (PK-like) 217 519 IPR011009 -
Lan1g1936 533 CDD STKc_CDC2L1 218 514 IPR045267 GO:0004674|GO:0005524|GO:0006468
Lan1g1936 533 PANTHER CYCLIN-DEPENDENT KINASE 145 532 - -
Lan1g1936 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 343 355 IPR008271 GO:0004672|GO:0006468
Lan1g1936 533 Gene3D Phosphorylase Kinase; domain 1 207 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1936 Lan-Chr1 34617334 34620494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1936 219 520 Core Cell Cycle Gene Families AT5G10270 46.855 1.11e-87 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Lan1g1936 Pkinase 7.7e-75 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0785 12 15058885 15061727 Lan1g1936 1 34617334 34620494 LSH