Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1931 ATGGTTTCAACGAGACGCAGTGGATCTCTCTCTGGTAACAGTTCCAAAAGATCTTCTTCTCCATCTGAAGATAAATCTCCTTCACCGAAGCGTCAAAAGGTTGACAATGGCGGTTCGCTGGAGAAGCCGGTGGCGGTGGCGGTGGCGGGAAATTCCAAGGAATTGCGTACTCCTGAGACGGTGCCTGATCCCGGAGAATGTGACTCCGGCGTTGTTAAGGTGGCCGGAGCTGGTGGAACTGATGCTGTGAGTTCCGGAAAAGCTGATGCTACTGCTGCTGAAGCTGTGGCGGCGCCAATTACTGATGGTTCTTCGCTGATTGATAAGGCCAAGTGTGGTTTCTCTTCTTGGATGACATGTCAGAAGCCAAGTCCTCTATTTGAGAGTCCAGCACCGTGGGGCAGACTCTTGTCACAGTCTGCACAGAATCCAAATGTTGCCATTTGCACGCAGAACTTCACAATTGGTTCTAGTAGAAGTTGCAACTTCCCATTGAAAGATCAAACTATAAGTGGAAATTTATGCAAGATCAAGCATACCCAGGGCAAGGGAAGTGATGTAGCTTCGCTAGAAAGTACAGGCAGCAAAGGGTCTGTTCTAGTAAATGGGATGCTTGTCAAGAAGAATACCAGCTGTGTTCTTAACTCGGGTGATGAGGTGGTTTTTGGTTTGCTGGGAAAACATTCTTATATTTTTCAGCAACTAAATACTGAGGTTGCAGTTAAGGGTGCGGAAGTCCAGAGTGGTGTTGGTCAATTTCAGCAAATTGAAAGGAGAGCTGGAGATGCTTCAACTGTGGCTGGGGCTTCTATCTTGGCTTCTCTTTCTAGCCCCAGACAGGACCTAACAAGATTGAAATCTCCAACTGAAAGTTCTAGTAAACCTCACCTGGATGCCTCTATTCATTCTGTTCTTGATGGTGGTATAAAAATTGAGATTAATGCCGTGGAATCTACTCCAAATGTGTGGAGTGCTAAAGCAGCTGATGTTGGAGCAAGCGAAAAGGATTCACCAATGGATTGCAATCCAGATGCTAGCACAGAGGCAGACAATGTAAAACTCTCTGGGGTGAATGTTTTCCTAAGGCCTTTCTTCAGGATATTAGACTGGCCTAATTTTAAACTGAAACTGAACAAAAGTATCTGTAAACAGGTATTGGAAGAAATAAATGGGATGCAGGATAGGCAGACTGCATCGACTTCGAGTAAATCTGTGCGCTGTGCAGTATTTAGAGAAGATGTCCGCGCTGCAATACTGGATGGAAGAGAAATAGAAGTGTCTTTTGATAACTTCCCCTACTATTTGAGTGAAAACACAAAAAATGTCCTGGTGGCAGCTTGCTTTATACACCTAAAGCATAAAGTTAAAGAACATGAAAAGTACACTGCGAATCTTACAACTATAAACCCTCGTATTCTGCTCTCAGGACCTGCAGGGTCAGAAATCTATCAGGAGATTTTGGCAAAAGCGCTTGCAAAATACTTTGGAACTAAGTTGCTCATATTCGATAGCCATTCACTTTTGGGTGGTTTATCCTCCAAGGAAGCTGAGCTACTCAAAGATGGATTTAATGCCGGAAAATCCTGCAGCAGCACCAAACAAAATCCTACAGCCACAGATTTGGCTAGGAGCATGAATCCATTAGGTAGTGAAACAGATATGCCTAGCTCTTCAAATGTACCTACATCATCTGGCCTTGAGTTTCAACTTAAGTTGGATACTGATAACATACCAGCTACCTCTGGAACAGCCAAAAATTGCTTGTTTAAACTAGGTGATAGGGTCAAATTTAGCTCTCCATCTTCTAGTGGCTTGTATCAGATATCTTCAAGGGGCCCGCCTAATGGAAGTCGGGGAAAGGTTGTCTTACTTTTTGATGATAACCCATTGTCTAAAATTGGTGTGAGATTTGATAAATCCATACCTGATGGAGTTGATCTTGGAGATGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAATGTCAATGATCTACAATCGGAAAACAGTGGTGTGGAGGAACTGGACAAATTACTTATTAATTCATTGTTTGAGGTTGTTTACAGTGAGAGCAGAAGTGCACCATTCATTTTATTCATGAAGGATACCGAGAAGTCTGTAGTAGGAAATGGAGATACATTTTCGTTTAAAAGCAGGCTTGAAAACCTTCCTGACAATGTGGTGGTAATAGGTTCACACACTCACACTGACAGTCGAAAGGTGAAGTCGCATCCTGGTGGTTTGGTTTTTACAAAATTCGGTAGCAATCATACTGCCCTCCTTGACATGTCTTTCCCGGATGGTCTCGGACGATTGCATGACAAGGGAAAGGAAGTCCCAAAGCCAAACAAAACTTTGACTAAGCTTTTCCCAAATAAAATTACAATTCACATGCCACAGGATGAGGCACTTCTAGCATCTTGGAAGCAGCAACTGGATCAAGATGTCGAGACTCTTAAAGTAAAAGCAAATTTACATCATTTGCGCACAGTTTTGGTCCGTTGTGGAATGGAATGCGAAGGACTTGAGACCTTGTGCATTAAGGACCAGACATTAACTAATGAAGATGCAGAGAAGATAGTTGGTTGGGCTTTAAGCCACCACCTCATGCAGAATTCTACAGATGATCCTGATTCAAAGCTTGTATTTTCTTGTGATAGCATCCAGTACGGAATTGGGATCTTGCAGTCTATACAGAATGAGGCCAAGAGCCTGAAGAAGTCTCTTAAGGATATTGTAACAGAAAACGAGTTTGAAAAGAAGCTTTTGGCTGATGTTGTTCCACCCAGTGACATTGGTGTTACTTTTGATGATATTGGAGCTCTGGAAAATGTCAAGGATACACTTAAGGAGTTGGTGATGCTTCCTTTACAAAGGCCACAACTGTTTTGCAAGGGACAATTAACCAAGCCGTGCAAGGGTATCCTATTATTTGGTCCTCCGGGAACAGGTAAAACAATGCTTGCAAAGGCAGTTGCTACTGAAGCTGGTGCAAACTTCATCAACATTTCTATGTCAAGTATTACATCTAAGTGGTTCGGTGAGGGCGAAAAATATGTCAAAGCTGTTTTCTCTCTGGCTAGTAAAATTGCTCCTAGTGTTATATTTGTGGATGAAGTTGACAGTATGTTGGGCCAGAGGGAAAATTCAGGGGAGCATGAGGCCATGCGGAAGATGAAAAATGAATTCATGGTGAATTGGGATGGGTTACGTACAAAGGATAAGGAGCGGGTTCTAGTGCTTGCAGCAACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATTAGGAGGCTACCACGAAGATTGATGGTTAAATTGCCAGATTCTCCCAATAGAGCAAAATTTTTGAAAGTTATACTGGCAAAAGAGGAATTATCCCCTGATATCGATTTGGATGCAGTTGCAAACATGACTGATGGATATTCTGGAAGTGATCTCAAGAATTTGTGTGTAGCTGCTGCACACCGTCCTATTAAAGAGATACTAGAAAAGGAAAAAAAGGAACGTGTTGCTGCTCTAGCAGAAGGTCAACCTGTTCCTTCATTATGTAGTAGTGTGGACATCCGATCTTTAAACAATGACGATTTCAAATATGCACATCAACATGTATGCGCAAGTGTTTCCTCCGAATCAGTAAATATGACTGAACTATCACAATGGAATGAACTCTATGGCGAAGGTGGTTCAAGAGTAAAGAAATCTCTTAGCTATTTCATGTGA 3717 0.4259 MVSTRRSGSLSGNSSKRSSSPSEDKSPSPKRQKVDNGGSLEKPVAVAVAGNSKELRTPETVPDPGECDSGVVKVAGAGGTDAVSSGKADATAAEAVAAPITDGSSLIDKAKCGFSSWMTCQKPSPLFESPAPWGRLLSQSAQNPNVAICTQNFTIGSSRSCNFPLKDQTISGNLCKIKHTQGKGSDVASLESTGSKGSVLVNGMLVKKNTSCVLNSGDEVVFGLLGKHSYIFQQLNTEVAVKGAEVQSGVGQFQQIERRAGDASTVAGASILASLSSPRQDLTRLKSPTESSSKPHLDASIHSVLDGGIKIEINAVESTPNVWSAKAADVGASEKDSPMDCNPDASTEADNVKLSGVNVFLRPFFRILDWPNFKLKLNKSICKQVLEEINGMQDRQTASTSSKSVRCAVFREDVRAAILDGREIEVSFDNFPYYLSENTKNVLVAACFIHLKHKVKEHEKYTANLTTINPRILLSGPAGSEIYQEILAKALAKYFGTKLLIFDSHSLLGGLSSKEAELLKDGFNAGKSCSSTKQNPTATDLARSMNPLGSETDMPSSSNVPTSSGLEFQLKLDTDNIPATSGTAKNCLFKLGDRVKFSSPSSSGLYQISSRGPPNGSRGKVVLLFDDNPLSKIGVRFDKSIPDGVDLGDACEGGQGFFCNVNDLQSENSGVEELDKLLINSLFEVVYSESRSAPFILFMKDTEKSVVGNGDTFSFKSRLENLPDNVVVIGSHTHTDSRKVKSHPGGLVFTKFGSNHTALLDMSFPDGLGRLHDKGKEVPKPNKTLTKLFPNKITIHMPQDEALLASWKQQLDQDVETLKVKANLHHLRTVLVRCGMECEGLETLCIKDQTLTNEDAEKIVGWALSHHLMQNSTDDPDSKLVFSCDSIQYGIGILQSIQNEAKSLKKSLKDIVTENEFEKKLLADVVPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPQLFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGQRENSGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVKLPDSPNRAKFLKVILAKEELSPDIDLDAVANMTDGYSGSDLKNLCVAAAHRPIKEILEKEKKERVAALAEGQPVPSLCSSVDIRSLNNDDFKYAHQHVCASVSSESVNMTELSQWNELYGEGGSRVKKSLSYFM* 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1931 1238 Gene3D - 132 241 - -
Lan1g1931 1238 SMART AAA_5 970 1107 IPR003593 -
Lan1g1931 1238 Coils Coil 894 914 - -
Lan1g1931 1238 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 392 1238 - -
Lan1g1931 1238 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 80 358 - -
Lan1g1931 1238 SUPERFAMILY SMAD/FHA domain 122 233 IPR008984 GO:0005515
Lan1g1931 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 933 1206 IPR027417 -
Lan1g1931 1238 Pfam AAA+ lid domain 1127 1162 IPR041569 -
Lan1g1931 1238 CDD AAA 972 1105 - -
Lan1g1931 1238 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 80 358 - -
Lan1g1931 1238 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 392 1238 - -
Lan1g1931 1238 ProSitePatterns AAA-protein family signature. 1077 1096 IPR003960 GO:0005524|GO:0016887
Lan1g1931 1238 MobiDBLite consensus disorder prediction 1 68 - -
Lan1g1931 1238 MobiDBLite consensus disorder prediction 23 37 - -
Lan1g1931 1238 Pfam ATPase family associated with various cellular activities (AAA) 974 1103 IPR003959 GO:0005524|GO:0016887
Lan1g1931 1238 Gene3D - 1106 1200 - -
Lan1g1931 1238 MobiDBLite consensus disorder prediction 528 564 - -
Lan1g1931 1238 MobiDBLite consensus disorder prediction 1 22 - -
Lan1g1931 1238 CDD FHA 153 233 IPR000253 GO:0005515
Lan1g1931 1238 Pfam FHA domain 154 223 IPR000253 GO:0005515
Lan1g1931 1238 Gene3D - 932 1213 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1931 Lan-Chr1 34566803 34578418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1931 933 1177 Calmodulin-binding Proteins AT3G56690 40.476 8.82e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1931 - - aprc:113849024 1925.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0777 12 15011886 15021957 Lan1g1931 1 34566803 34578418 LSH
Lan1g1931 1 34566803 34578418 Lan15g0443 15 10239508 10256627 PCT
Lan1g1931 1 34566803 34578418 Lan14g0349 14 7239387 7243651 PCT
Lan15g0443 15 10239508 10256627 Lan1g1931 1 34566803 34578418 PCT
Lan14g0349 14 7239387 7243651 Lan1g1931 1 34566803 34578418 PCT