Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1923 ATGGACTGGAATTTGAAATCACCTTCTTTGGATTTGACTGAAGTGAAAAAAGGAACAGCTTTTCCCAACATGGAAACAGTGGATGAAGGGTCAAGTAGGTTTGGACTTTACAGAACAAACGGGGAGTTTTCTGTGGACTTGAAGCTTGGTCAGATTGGGAATGTTGGCATAGAATCAATGTTGTACAAGCCCAAAGATGGTGCTTCTGGTGCTGGACTTTCCAAAATTTCAGGGTCATCTAAGAGAGCTAGAGCTTTTAACAATGGGAATCACATAGTTAAATGCCTTGTGGATGGGTGCAAAGCTGATCTTAGTGATTGTAGGGACTATCATAGGCGCCATAAGGTGTGTGAACTTCATTCCAAGACTCCACAGGTCACAATTGGTGGCCAGAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCACTCATTGGAGGAATTTGATGAAGGAAAAAGAAGCTGCAGAAAACGCTTAGATGGACACAACCGAAGGAGAAGAAAGCCCCAACCAGAATCATTCATGCGTTCTAGTAGTTTTTTGTCCAATTACCAAGGCACCCAATTGCTCCCCTTCTCAAGTTCACAAATATACTCTTCCCATGCTGTAATGAATCCTGCTTGGAGTGAAGGAGTTATTGCTTCTTGTGCAGATATTAGGCTCCACAGTCACAAGCAACACCAACAAGTAAATTTCATTGATAAACAAGACCTTTTTCTTGGATCTTTTCCAACCACAAGCTACAAAGAAGTGAAGCAACTTGCATTCCTACAAGGTGATCACAATTCTACAGCCACACTCAACAACCAAAACACAAATCTTCAAACACTTCTCAGGACTAGCCCTTACTCAGAAAGTAGTAGTGGAGGGGTGAGATGCAAAATGTTCTGTGATAATAGCCTAACAAGTTCTGTTCATGACTCTCCTTGTGCTCTCTCTCTTCTGTCATCACCACAGACACATAACAACCCTGGAAATGGATTGAACCAAATGGTGCAGCCTCACTCATCATCATTTATGCAACCCTTAGGCCTGAGCCTGCATGATAATAATAGCTTGGAGCCTGTGGACTCAGTTTTGAATCCTAATGGGAGTGACCATTGTTCCTCAATGTATAACAACATTGGTTCTAATGGATCACAGGGGAGTGGTGCTCCTCAACTATTTCCATTTCAATGGGAATAG 1185 0.4253 MDWNLKSPSLDLTEVKKGTAFPNMETVDEGSSRFGLYRTNGEFSVDLKLGQIGNVGIESMLYKPKDGASGAGLSKISGSSKRARAFNNGNHIVKCLVDGCKADLSDCRDYHRRHKVCELHSKTPQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPESFMRSSSFLSNYQGTQLLPFSSSQIYSSHAVMNPAWSEGVIASCADIRLHSHKQHQQVNFIDKQDLFLGSFPTTSYKEVKQLAFLQGDHNSTATLNNQNTNLQTLLRTSPYSESSSGGVRCKMFCDNSLTSSVHDSPCALSLLSSPQTHNNPGNGLNQMVQPHSSSFMQPLGLSLHDNNSLEPVDSVLNPNGSDHCSSMYNNIGSNGSQGSGAPQLFPFQWE* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1923 394 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 12 394 IPR044817 GO:0003677
Lan1g1923 394 Gene3D - 86 156 IPR036893 GO:0003677|GO:0005634
Lan1g1923 394 Pfam SBP domain 95 168 IPR004333 GO:0003677
Lan1g1923 394 ProSiteProfiles Zinc finger SBP-type profile. 92 169 IPR004333 GO:0003677
Lan1g1923 394 SUPERFAMILY SBT domain 93 174 IPR036893 GO:0003677|GO:0005634
Lan1g1923 394 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 12 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1923 Lan-Chr1 34490200 34493546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1923 1 394 SBP-box Gene Family AT5G50670 38.686 7.59e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan1g1923 SBP 4.3e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0765 12 14920636 14924386 Lan1g1923 1 34490200 34493546 LSH
Lan1g1923 1 34490200 34493546 Lan1g1475 1 24752881 24758979 LSH