Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1907 ATGGCAGCTTTTTCATATCAATACCATCCCTTTCTTGTTGACCCTTCATTCATTCCCAACACTCCTATCATCATGTCTTCTTTCACTCATACCCAACAATCTCATATAAACACTGCCCTTACTCCTTCTTATGATTTTCACTTTCTTCAAGCAAATCAAGAAATTAGTTGTGTTGATCAAACCTCCAAAGTTAGCATCTGTGACACTGACCCTTGTTCTGTCACCAAAAGTAACCATAGTCCTGACTCCTCCATGGTTGTGGATAAGCTTGAAAACGGTGAGCATGTAACTCAGAAAGTGACTTCTATAGAAAAGAAGAGGAGAACTAGAAATGGGTCTCTCTTGAGTGGTTCAACATCTAAGGACTCAAGAGAAGTGAGAAGCAAGAAGCAAAAGAAGAGCAACGATGAGGTAAAAGAAGAAGAGAAGAAGGTTGAGAAAGAAGGTCCAGAACAGCCTCCAAAAGGATACATCCACGTCAGAGCAAGAAGGGGTCAAGCAACAGATAGCCACAGCCTTGCTGAAAGGGTAAGAAGGGAGAAAATAAGTGAGAAGATGAACATGTTGCAGAAACTTGTGCCAGGCTGTGATAATGTTACTGGAAAGGCCCTTGTGTTGGATGAAATAATCAATTATGTTCAGTCCCTACAAAATCAAGTGGAGTTCTTGTCATTGAAGCTTGCTTCTGTGAATCCCATGTTTTTTGATTTGGCTATGGACCTAGACACCCCAATGAAATTAAATAGCATAGCATCACCAACACCAACACCATCTATACCACAATGCAGCCTCAACCATTCCACAGTTTTTACTGATACATTCACCATGGCAACAAACAACACCAGAGGTTTCCCTGCTAGTGCTAATGACTATCTTTTGGACTATGCTTATCTTCAAGGGCAAAGGTCAAATTTCTTCTCTGAGTATAGTGTAGGAGATCAGTTCTGGGACGTGGAAGACCAACAACAAAAGTTTCTTAAGCCATATGGATTCAGCAATGACTCATCTTCCTTAAATTAA 1020 0.4059 MAAFSYQYHPFLVDPSFIPNTPIIMSSFTHTQQSHINTALTPSYDFHFLQANQEISCVDQTSKVSICDTDPCSVTKSNHSPDSSMVVDKLENGEHVTQKVTSIEKKRRTRNGSLLSGSTSKDSREVRSKKQKKSNDEVKEEEKKVEKEGPEQPPKGYIHVRARRGQATDSHSLAERVRREKISEKMNMLQKLVPGCDNVTGKALVLDEIINYVQSLQNQVEFLSLKLASVNPMFFDLAMDLDTPMKLNSIASPTPTPSIPQCSLNHSTVFTDTFTMATNNTRGFPASANDYLLDYAYLQGQRSNFFSEYSVGDQFWDVEDQQQKFLKPYGFSNDSSSLN* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1907 339 Gene3D - 163 233 IPR036638 GO:0046983
Lan1g1907 339 Pfam Helix-loop-helix DNA-binding domain 170 217 IPR011598 GO:0046983
Lan1g1907 339 MobiDBLite consensus disorder prediction 71 173 - -
Lan1g1907 339 CDD bHLH_AtBPE_like 156 232 - -
Lan1g1907 339 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 339 - -
Lan1g1907 339 MobiDBLite consensus disorder prediction 71 85 - -
Lan1g1907 339 Coils Coil 128 148 - -
Lan1g1907 339 SMART finulus 172 222 IPR011598 GO:0046983
Lan1g1907 339 MobiDBLite consensus disorder prediction 122 173 - -
Lan1g1907 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 216 IPR011598 GO:0046983
Lan1g1907 339 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 339 IPR024097 GO:0006355
Lan1g1907 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 232 IPR036638 GO:0046983
Lan1g1907 339 MobiDBLite consensus disorder prediction 88 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1907 Lan-Chr1 34294679 34298068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1907 1 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 42.248 1.35e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan1g1907 HLH 3.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1907 - - gmx:100796018 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1907 1 34294679 34298068 Lan1g1493 1 25146075 25149805 LSH