Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1903 ATGGCATCAAATTCTCAGAAAATTGCTGAGGCTGCTTCAACTGATTCTCCAACAGCAACACCAGTTGGAAAACAATCTGCAACAACAACAACAGAAGTTGTTGGTGACCCCAAAAGTGAAAGAATCAAACCTACAAGGTACCCAAGATGGACAAGACAAGAAACACTTCTTCTCATTGAAGCCAAGAAAATGGTGGAAAATAGAGACCAACTTTGCAACTTGACACCATCATCTATCCTTCTTAACCACACTGATCCAAAGTGGAACATAGTTTCATCATGTGTCCAGCAACAAGGTGTGAAAAGAGGACCTATTCAGTGCAGAAAAAGATGGGGCAATCTTCTCACTGATTTCAGGAAGGTTAAGAAATATGAGTCAGATATGAAAGATGATGGTGAATCTTTTTGGATGATGAGGAGTGATAAAAGGAAAGAAAACAAGTTACCAGGGTTCTTTGATGAAGTGGTGTATAAGGTTATAGATGGTGATGATTTAAGTGGTGCTGCAGTGCCTTTGGCTTTGATGAAGATGGCATCAAAACCTGAGAGTAGTGCTGAGCATGCTGAAAAAGTGAAGTTATTAGGGCAAAGTAAGGATGATGAAGATGGTGATGAAGATGAGGAAGATGAAACTATTGCTGATAGTGAGAAAATGTATTGGAGCACAGAGAAGAACACATTTGAGGCAAACAGTGAAAGAAAAATGGGATTCAGTGCAATAAAAGCATCAACTTCTAAGGAAACATTGCTGAGAGGAAGTGTGAATGTAACACCTACACTTGCTCTTGCACTAGCACCTCCTGGTTTCCAGAGAGAACCTGAGTCTGAAGAGGGATACAAGAGAAGGAGATTATCACCAGAAAATGATGACACAACAAATTTCAGCAATGATGTTATCAAAGTGCTAAGGAGGAATACTAACATAATGAAAACCTATCTTGAAGCTCAGAACATGAATCATCAATTGGCCATGGAGCAGCAGAAGGAACAATCAGACAAGTTAGTTGCAGCTCTTGGCAAGATCACAGATGCTATCACAAAAATTGCTGACAAGCTAGGAATCAGTCTTGAGCCGCCTGCTACACTGGTGGCCACCGCCGTATGCGGGTCAAATCCCATGTCATATGGGTATGGCACAGTGAAACAGCTGCATGGTATCATGACAGAACAGCGTAGGGTGGCTTGTTTCGGGTCCAAGCCACGTTGGTCCGTGCACTATGAGCCAGATACTCAACCAAAAAAGAGATATCTATCTATTATCAATTACTTACCATAA 1275 0.4125 MASNSQKIAEAASTDSPTATPVGKQSATTTTEVVGDPKSERIKPTRYPRWTRQETLLLIEAKKMVENRDQLCNLTPSSILLNHTDPKWNIVSSCVQQQGVKRGPIQCRKRWGNLLTDFRKVKKYESDMKDDGESFWMMRSDKRKENKLPGFFDEVVYKVIDGDDLSGAAVPLALMKMASKPESSAEHAEKVKLLGQSKDDEDGDEDEEDETIADSEKMYWSTEKNTFEANSERKMGFSAIKASTSKETLLRGSVNVTPTLALALAPPGFQREPESEEGYKRRRLSPENDDTTNFSNDVIKVLRRNTNIMKTYLEAQNMNHQLAMEQQKEQSDKLVAALGKITDAITKIADKLGISLEPPATLVATAVCGSNPMSYGYGTVKQLHGIMTEQRRVACFGSKPRWSVHYEPDTQPKKRYLSIINYLP* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1903 424 SMART sant 46 117 IPR001005 -
Lan1g1903 424 MobiDBLite consensus disorder prediction 1 35 - -
Lan1g1903 424 Gene3D - 50 120 - -
Lan1g1903 424 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 36 352 - -
Lan1g1903 424 MobiDBLite consensus disorder prediction 273 288 - -
Lan1g1903 424 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 36 352 - -
Lan1g1903 424 ProSiteProfiles Myb-like domain profile. 49 115 IPR001005 -
Lan1g1903 424 MobiDBLite consensus disorder prediction 269 292 - -
Lan1g1903 424 Pfam Myb/SANT-like DNA-binding domain 49 136 IPR044822 -
Lan1g1903 424 MobiDBLite consensus disorder prediction 182 199 - -
Lan1g1903 424 MobiDBLite consensus disorder prediction 180 219 - -
Lan1g1903 424 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1903 Lan-Chr1 34233110 34236815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1903 17 125 Trihelix Transcription Factor Family AT3G25990 27.523 2.21e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lan1g1903 Myb_DNA-bind_4 6.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1903 - - lang:109338322 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0738 12 14621902 14624134 Lan1g1903 1 34233110 34236815 LSH
Lan1g1903 1 34233110 34236815 Lan1g1503 1 25384519 25386306 LSH