Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1896 ATGCCTCTTTTAAGGAGAAAGCCTTTTACTTTGGTTGATCCACCAAAGGATTTGAAGCCAGATGAGCTGGTTTACCAAATTCGATTTACAAAGGAAATATTTCGAGATTATCATGAATACTTGAACCATTTAAATCTATATCGCCAGAGGATTTGGACGTGTAAAGTCTCTGGAAAAACTAGCTTGACTTATGAAGAGGCTTTGGTGTCAGAACAAAATGCCACTGAGAAAGTTAAACAGTTTCCTAAAGAATTAATGACATTTGCTCTAAAGATTATTCAGTACAGTATGCTCCCTTTGAAGGTTCTCGCTGATTCTATTAATGAAAAATTGCTGGGACATTTATTTGTGGGTGCTGAACTGTTTGTGAAAAAGGATGATGGACCGTATCCATGCAAAATATTGAAAGTCATCCAGGAGGGAGTTGACAAATGCTGTTATGAGGTAGCGTGGCTCAACAAGGACAAGAATATAACTGAAAAAGCGGATGTCAATGCGGAAGACTTGGTGCAAAAGAAGCCTCTTTTTAGTAGAAATATTTTGAAGTCTTTTATCCGGGAATCCACATATCGGAACGCCCCTTGGGTTTTACACGAAGAATTGGCACAAAAACATGGAATCTCAACCGACATTCCTAAGGAGTTACAAGGAAGAATTTTCATAAAAAATGGAATTTTAACCTGCTCCAAGAAAAGAAAAAATGAGGAATCAATGGAGGAAACTGAAACCAGCAACAAAAGGAAGAAGTTAGATCACTTGGATGGTTCTACCCAAGAGGAAGAAAATTGCCAACACATAGACGAGCCAGTCAAATATCCAATTGATGATCTATTGGTGAAGCCTGGCCCAGATGATCCTGTTTTCACTGCCCGTCCTTCTCCTTTGAGAGACTTTAATGTTTCAATGGATTGTGTAGGAGATCTCTTAAAGATTTGGGATTTTTGTACTTCTTTTGCTAAACTGTTGAATTTGTGCCCGTACTCTCTAGAGGATTTTGAAAATGCAATACGCCACAGGGAAAGCAATGTGGTTCTCCTTGTGGAATCTCATGCAGCACTCTTTCGGGTTCTCATCAATGATGACGGAGAATACTCTACATTCTTAAGGAAACGACGACCGAAGCATAAGATTACAATGATTAATTGGTCAGAGTATTTATCCGATTTTATGGAAATGATCAATATTCCTGGACTACGCCAATTTGAAGCAACCATTAAACGGGGACGATATGGCTTTTTAGATGTCAATGCTAAATTAGAAATCCTATCAGTATTGGTTGATCGAGTCCTTGAAACAGGAATTTTCAGGAAAAGAATGGATGAGCTTATTGAACAGCGACAGGCACTTGGAGCCTCTAGAAGGGAAGAAGCACTGGAAGATGGTAGGAAAAGAAGAAAAGAAAAGGAACAGTTGAAAGCTGAGCCAGAAAGCAATGGAGTTGTGGATGGGCATCATCTAAACAGTGCAAGTGTCTCAACAAATAATAATCACATTATGCAGAATGGAGACATGGGAGAGATCAAACCATCTAGGAATGATACACCGGGTAGAAGTGGGATCAAACATTCAAATCCAGCTTCAAAAAAGATACAGAAGAAGCTGACTTCAGAGCTGGAAGAACCAGCCGAAAATGGTAAAGAAGTATCCAGTAAGAAATTACAGCAACAATTGAAGGATGACAAGGATCCATCAGAGAAGAATAGTGTAGAACAGAGGAGAGCATATTATGAACGGGAGATGGAGAAACGATTAATTAGTAGAAGCCCATTAGGCAAGGACAGAGATTATAATAGGTATTGGTGGTTCCCCCGTGATTGGAGGATATTTGTTGAAAGTTCTGATTCCAAGGAGTGGGGATACTACAGCAGCAAGGAAGAGGTTGACGCATTGATGGGTTCACTGAATTGCAAGGGTGAGCGGGAAAGGGCACTACAAAAACAATTGGGAATATGTTATAATAGTTTATGCTCGGAACTCCAGAAAAAATCGAAGGATTTGATGCACAAGGTTGAAGCAGATGAGTCTGTGGTTCGAAGGTCTACTCGTGTTCGAGCTCCACCTCAGCAAAACCCTGCCAATGCTTTCCTCAGATATGTTAACAAGTGGAAGGAAGAGTAG 2118 0.3994 MPLLRRKPFTLVDPPKDLKPDELVYQIRFTKEIFRDYHEYLNHLNLYRQRIWTCKVSGKTSLTYEEALVSEQNATEKVKQFPKELMTFALKIIQYSMLPLKVLADSINEKLLGHLFVGAELFVKKDDGPYPCKILKVIQEGVDKCCYEVAWLNKDKNITEKADVNAEDLVQKKPLFSRNILKSFIRESTYRNAPWVLHEELAQKHGISTDIPKELQGRIFIKNGILTCSKKRKNEESMEETETSNKRKKLDHLDGSTQEEENCQHIDEPVKYPIDDLLVKPGPDDPVFTARPSPLRDFNVSMDCVGDLLKIWDFCTSFAKLLNLCPYSLEDFENAIRHRESNVVLLVESHAALFRVLINDDGEYSTFLRKRRPKHKITMINWSEYLSDFMEMINIPGLRQFEATIKRGRYGFLDVNAKLEILSVLVDRVLETGIFRKRMDELIEQRQALGASRREEALEDGRKRRKEKEQLKAEPESNGVVDGHHLNSASVSTNNNHIMQNGDMGEIKPSRNDTPGRSGIKHSNPASKKIQKKLTSELEEPAENGKEVSSKKLQQQLKDDKDPSEKNSVEQRRAYYEREMEKRLISRSPLGKDRDYNRYWWFPRDWRIFVESSDSKEWGYYSSKEEVDALMGSLNCKGERERALQKQLGICYNSLCSELQKKSKDLMHKVEADESVVRRSTRVRAPPQQNPANAFLRYVNKWKEE* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1896 705 MobiDBLite consensus disorder prediction 516 531 - -
Lan1g1896 705 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Lan1g1896 705 ProSiteProfiles DDT domain profile. 302 363 IPR018501 -
Lan1g1896 705 Coils Coil 454 474 - -
Lan1g1896 705 MobiDBLite consensus disorder prediction 450 479 - -
Lan1g1896 705 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 587 648 IPR028941 -
Lan1g1896 705 SMART testlast3 302 363 IPR018501 -
Lan1g1896 705 Pfam DDT domain 303 360 IPR018501 -
Lan1g1896 705 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 703 - -
Lan1g1896 705 MobiDBLite consensus disorder prediction 483 501 - -
Lan1g1896 705 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Lan1g1896 705 MobiDBLite consensus disorder prediction 450 571 - -
Lan1g1896 705 MobiDBLite consensus disorder prediction 532 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1896 Lan-Chr1 34183035 34190733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1896 400 648 Homeobox Transcription Factor Family AT5G44180 28.244 5.28e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lan1g1896 WAC_Acf1_DNA_bd 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1896 - - gmx:100789956 975.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1896 1 34183035 34190733 Lan1g1528 1 25751963 25759897 LSH