Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1892 ATGCAAGGTGAATTAGTGTTACCACCAGGGTTCAGATTTCACCCCACTGATGATGAGTTGGTGAATCATTACTTGTGTACAAAATGTGCTTCTCACTCCATTCCCGCTCCTGTAATCAAAGAAATTGATTTATATAAGTTTGATCCATGGCAGCTTCCAGGAATGGCTGCTTATGGTGAGAAAGAGTGGTACTTCTTTTCTCCAAGGGATCGAAAATATCCGAACGGTTCACGTCCGAACAGGGCGGCTGGGACTGGGTATTGGAAGGCTACCGGAGCTGACAAGCCGATCGGAAAGCCGAAACCGCTTGGGATCAAGAAGGCTCTCGTGTTCTATGTAGGCAAAGCCCCTCAAGGAGTCAAAACTAATTGGATTATGCATGAATATCGCCTTGCCAATGTTGACAGATCTGCTCACAACAAAAATAATTTGAGACTTGATGATTGGGTGTTATGTAGAATTTACAACAAGAAAGGGAAGATTGAGAAATTAAACAGCATGGAACAGAAACCACCACTATCAAATGTTTCAGAGGAACTTGTTCAGTATGAGAATGAGAGAAAGCCTGAGATTAAGAACATGTATGGCCACATTGATTTCAGGAATAACCAATTGCACATGGACACATCAGATTCAAGTCCAAGGTGGGAGCACGTGGTTTCACCAGATGTCACGTGCGACAAGGAAGTGCAGAGTGAGACAAAGTGGAATGAACTTGAGCTAGGTCCAAGTCCAACCTTTGATTTTCAGTTCAATTTCATGGACAATGAAATACACATGCCACCATATGACCCTTTTGCCCCTCAGTATCAAATGAACCAGCCTTCCCCATTTCAGGACATATTAATGTTCTATCAACAATAA 864 0.4271 MQGELVLPPGFRFHPTDDELVNHYLCTKCASHSIPAPVIKEIDLYKFDPWQLPGMAAYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKPLGIKKALVFYVGKAPQGVKTNWIMHEYRLANVDRSAHNKNNLRLDDWVLCRIYNKKGKIEKLNSMEQKPPLSNVSEELVQYENERKPEIKNMYGHIDFRNNQLHMDTSDSSPRWEHVVSPDVTCDKEVQSETKWNELELGPSPTFDFQFNFMDNEIHMPPYDPFAPQYQMNQPSPFQDILMFYQQ* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1892 287 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
Lan1g1892 287 PANTHER NAC TRANSCRIPTION FACTOR 56 5 263 - -
Lan1g1892 287 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Lan1g1892 287 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Lan1g1892 287 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Lan1g1892 287 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 5 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1892 Lan-Chr1 34118387 34119875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1892 1 280 NAC Transcription Factor Family AT5G08790 62.324 8.80e-113 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lan1g1892 NAM 5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1892 - - gmx:100170751 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0707 12 13857165 13858523 Lan1g1892 1 34118387 34119875 LSH
Lan1g1892 1 34118387 34119875 Lan1g1542 1 25974023 25975979 LSH