Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1885 ATGGAAGATGATCATAAGAATCATATTAATTTGCCAAATGGGTTCAATAGTGGAAGCCCTGAAAGTCCATCCTTAAAAGTAAACAACAATAACAACAACCATAATAGTAACAAAGAACAAGACCGTTTTCTACCTATAGCCAATGTTGGTAGAATCATGAAAAAAGTGATTCCTGCTAATGGAAAAATCTCAAAGGATGCAAAAGAGACAGTTCAAGAATGTGTATCTGAGTTCATAAGTTTTGTAACAGGAGAAGCTTCTGATAAATGTCAAAGAGAGAAGAGAAAGACTATCAATGGAGACGATGTTATATGGGCTATTACAACCTTAGGTTTTGATGATTATGTTGAACCATTGAAAATCTACCTTCAGAAATATAGAGAAATTGAAGGAGAGAAACTTAATGTTCCAAAGCAACAACGTTCTGAACAAAGATTACATCAACATCATAACCAAGATGAAAATGTTCAATCATTAAATGGGAGTTTATATTCTTCAACAAATCTCATTTCTCAGTCTCCTTATGTGGCTACAGATCAATCATTTTCACAACCATTCTCACCAAATTCGATTCAGAAACAGTTACGACCGCATGATCAGATTGACTCAATGGGGCATTGGTATGAGTAA 630 0.3429 MEDDHKNHINLPNGFNSGSPESPSLKVNNNNNNHNSNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFDDYVEPLKIYLQKYREIEGEKLNVPKQQRSEQRLHQHHNQDENVQSLNGSLYSSTNLISQSPYVATDQSFSQPFSPNSIQKQLRPHDQIDSMGHWYE* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1885 209 MobiDBLite consensus disorder prediction 10 41 - -
Lan1g1885 209 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 43 107 IPR003958 -
Lan1g1885 209 MobiDBLite consensus disorder prediction 180 197 - -
Lan1g1885 209 MobiDBLite consensus disorder prediction 1 41 - -
Lan1g1885 209 Gene3D Histone, subunit A 30 162 IPR009072 GO:0046982
Lan1g1885 209 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 6 198 - -
Lan1g1885 209 ProSitePatterns NF-YB/HAP3 subunit signature. 74 90 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lan1g1885 209 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 198 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lan1g1885 209 SUPERFAMILY Histone-fold 40 144 IPR009072 GO:0046982
Lan1g1885 209 MobiDBLite consensus disorder prediction 180 209 - -
Lan1g1885 209 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Lan1g1885 209 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Lan1g1885 209 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1885 Lan-Chr1 34027075 34027894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1885 14 207 CCAAT-HAP3 Transcription Factor Family AT2G13570 65.049 1.22e-70 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lan1g1885 CBFD_NFYB_HMF 7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1885 K08065 - gmx:100780647 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1885 1 34027075 34027894 Lan1g1553 1 26106606 26107452 LSH