Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1880 ATGGATACCAACCAGCACACTTCATCATTCACAAATGTTAACAACAACACTTGGAATCTTGAGAAGATGGAAACAAATGAACATGATGGTATCATTCTCCAAGTTCAAGATCAACACCAAATCCCTATGGCTTCTACAATTTGGCAAAACAACTACCACCACCTTCTTCAAATACCACCATCTTCATCTTCATCAACCATACTAGCTCCTAATTCTTCTTCTTCATCAGGGTTTCTTAGTGACATACTTGGAATCCGCATAGAAGAAGATGAAGAACCTGAAGAGGAGCTTGGAGCCATGAAGGAAATGATGTACAAGATTGCAGCTATGCAACCAGTGGATATAGACCCTGCCACTATAAGGAAGCCTAAGAGAAGAAACGTTAGGATTAGCGACGATCCTCAAAGCGTCGCTGCGCGTCACAGGCGAGAGAGGATTAGTGAGAAGATCCGAATCCTCCAAAGACTCGTCCCTGGAGGAACAAAGATGGACACAGCATCCATGCTCGACGAAGCAATTCGCTATGTCAAATTCTTGAAGAGACAAATTAGGTTGCTTCAATCAACTCCTCAAAACCCTCCACAACAACAACCACAGTGCAATGTTGGTGTTGCTTCTACTAGCGCGTTGTTTTTAGCCTCGAATGGTTGTGATTGGCCTTTTGCACCCAATATGTCACAAAGTTCCATCGCTATCGCCGCCACCACCACCACCGCCTCCATGGAAATGCCCGCTCGACTAGGATTCAACACAGGTAGCCATGGACAAACATATGATGGCTCCTCAAGCTTTACTCATCATGAGGTAATTAGTGAATAA 819 0.442 MDTNQHTSSFTNVNNNTWNLEKMETNEHDGIILQVQDQHQIPMASTIWQNNYHHLLQIPPSSSSSTILAPNSSSSSGFLSDILGIRIEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTPQNPPQQQPQCNVGVASTSALFLASNGCDWPFAPNMSQSSIAIAATTTTASMEMPARLGFNTGSHGQTYDGSSSFTHHEVISE* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1880 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Lan1g1880 272 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 37 252 IPR045843 GO:0003700|GO:0006355
Lan1g1880 272 CDD bHLH_AtIND_like 131 188 - -
Lan1g1880 272 Pfam Helix-loop-helix DNA-binding domain 140 179 IPR011598 GO:0046983
Lan1g1880 272 SMART finulus 136 185 IPR011598 GO:0046983
Lan1g1880 272 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 37 252 - -
Lan1g1880 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 198 IPR036638 GO:0046983
Lan1g1880 272 Gene3D - 133 199 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1880 Lan-Chr1 33999427 34001208 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1880 97 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 82.143 8.22e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan1g1880 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1880 - - aprc:113856609 352.443