Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1875 ATGTATGCTTCTACTTCCTTTACTTCACACTTTGTCCATGAAATTCTTGAGCACTCCCACTCAAGAAAGTTACTCCTTCAAAATCCACTTAATCAAACCAATCCCCCCACAACTTCCATTAACAGCCATAACTCAACAGATTTATATCTTGGTAGCCCTAATTTTGATGCAAATGTTGTCATGATACTCTTAGTCCTATTGTGTGCTGTTATTTGCTCATTGGGGTTGAACTCTATCATAAGATGTGTCTTTAGGTGTTCAAATTTAGTCATTAATATTGACTCATCATCATCCAACCCTTCACTAAAATTAGCCAACATAGGAATTAAGAAGAAAACTCTTAAGACTTTCCCTATAGTGACCTACTCAGCTGAGATGAATCTTCCAAGTTTGGACACTGAGTGTGTGATATGTCTCTCGGAGTTCGACAATGATGATAAGGTGCGGCTTTTGCCGAAATGCAACCATGCTTTCCATGTTACTTGCATTGATAAATGGCTTAGTTCACACTCATCTTGCCCTAAGTGTAGACAATGCCTCATTGAGACTTCCCACAAGATTGTTGGATCACAAGCAACTGTGGTGCCACTGCCAGTGCCAGAAACCGTTATAAGGATTGAACCACTTGAGCCTGAAGGTTTGGTACGTAACTACAGGGAAGCAAACTAA 669 0.3991 MYASTSFTSHFVHEILEHSHSRKLLLQNPLNQTNPPTTSINSHNSTDLYLGSPNFDANVVMILLVLLCAVICSLGLNSIIRCVFRCSNLVINIDSSSSNPSLKLANIGIKKKTLKTFPIVTYSAEMNLPSLDTECVICLSEFDNDDKVRLLPKCNHAFHVTCIDKWLSSHSSCPKCRQCLIETSHKIVGSQATVVPLPVPETVIRIEPLEPEGLVRNYREAN* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1875 222 PANTHER RING-H2 FINGER PROTEIN ATL78 1 221 IPR044602 GO:0016567|GO:0016740
Lan1g1875 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 181 IPR013083 -
Lan1g1875 222 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 221 - -
Lan1g1875 222 SUPERFAMILY RING/U-box 113 182 - -
Lan1g1875 222 SMART ring_2 135 176 IPR001841 -
Lan1g1875 222 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Lan1g1875 222 Pfam Ring finger domain 134 177 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1875 Lan-Chr1 33920441 33921337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1875 40 214 C3H Transcription Factor Family AT1G76410 41.477 1.61e-39 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1875 K19040 - gmx:100527126 304.293