Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1874 ATGTATGCTTCTACTTCCTTTACTTCACACTTCGTCCATGAACTTCTTGGGCACTCCCACTCAAGAAAATTACTCCTTCAAAATCCACTTAATCAAACAAATGCCCCCGAAGCTTCCATTAACAGCTACAACTCAACAAATCTATATCTTGAAGGTCATAACTTTGATGCAAATGTTGTCATGATACTCTCTATCCTATTGTGTGCTGTTATTTGTTCATTGGGGTTGAACTCTATCATAAGGTGTGCCCTTAGGTGTTCAAATTTAGTCATTAATATTGACTCATCATCATCCATCACAAGCAACCCTTCACCAAAATTAGCCAACATAGGAATCAAGAAGAAAACTCTTAAGACTTTCCCTATAGTGACCTACTCAGCTGAGATGAATCTTCCAAGTTTGGACACTGAGTGTGTGATATGTCTCTCGGAGTTCGACAATGATGATAAGGTGCGGCTTTTGCCGAAATGCAACCATGCTTTCCATGTTACTTGCATTGATAAATGGCTTAGTTCACACTCATCTTGCCCTAAGTGTAGACAATGCCTCATTGAGACTTCCCACAAGATTGTTGGATCACAAGCAACTGTGGTGCCACTGCCAGTGCCAGAAACCGTTATAAGGATTGAACCACTTGAGCCTGAAGGTTTGGTACGTAACTACAGGGAAGCAAACTAA 678 0.4071 MYASTSFTSHFVHELLGHSHSRKLLLQNPLNQTNAPEASINSYNSTNLYLEGHNFDANVVMILSILLCAVICSLGLNSIIRCALRCSNLVINIDSSSSITSNPSPKLANIGIKKKTLKTFPIVTYSAEMNLPSLDTECVICLSEFDNDDKVRLLPKCNHAFHVTCIDKWLSSHSSCPKCRQCLIETSHKIVGSQATVVPLPVPETVIRIEPLEPEGLVRNYREAN* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1874 225 Pfam Ring finger domain 137 180 IPR001841 -
Lan1g1874 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 184 IPR013083 -
Lan1g1874 225 SMART ring_2 138 179 IPR001841 -
Lan1g1874 225 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Lan1g1874 225 PANTHER RING-H2 FINGER PROTEIN ATL78 1 224 IPR044602 GO:0016567|GO:0016740
Lan1g1874 225 SUPERFAMILY RING/U-box 116 185 - -
Lan1g1874 225 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1874 Lan-Chr1 33914208 33915525 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1874 29 184 C3H Transcription Factor Family AT3G10910 44.025 1.28e-38 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1874 K19040 - gmx:100527126 324.324