Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1873 ATGTATGCTTCTACTTCCTTTACTTCACACTTCGTCCATGAACTTCTTGGGCACTCCCACTCAAGAAAATTACTCCTTCAAAATCCACTTAATCAAACAAATGCCCCCGAAGCTTCCATTAACAGCTACAACTCAACAAATCTATATCTTGAAGGTCATAACTTTGATGCAAATGTTGTCATGATACTCTCTATCCTATTGTGTGCTGTTATTTGTTCATTGGGGTTGAACTCTATCATAAGGTGTGCCCTTAGGTGTTCAAATTTAGTCATTAATATTGACTCATCATCATCCATCACAAGCAACCCTTCACCAAAATTAGCCAACATAGGAATCAAGAAGAAAACTCTTAAGACTTTCCCTATAGTGACCTACTCAGCTGAGATGAATCTTCCAGGTTTGGACACTGAGTGTGTGATATGTCTCTCAGAGTTCACCAATGATGATAAAGTGCGACTTTTACCAAAATGCAACCATGGTTTTCATGTTCCTTGCATCGATAAGTGGCTTAGTTCACACTCATCTTGCCCTAAGTGCAGACAGTGTCTCATTGAGACAAGCCACAAGATTGTTAGATCACAACCTGGACGTGTGGTACCACTCCTAGTGCCAGTGCCAGAAACCATAGAAACCATTATAAGGATTGACCCACTTGAGCCAGAAAGTTTGGTACGTAACTATAGGGGAGATTGA 693 0.404 MYASTSFTSHFVHELLGHSHSRKLLLQNPLNQTNAPEASINSYNSTNLYLEGHNFDANVVMILSILLCAVICSLGLNSIIRCALRCSNLVINIDSSSSITSNPSPKLANIGIKKKTLKTFPIVTYSAEMNLPGLDTECVICLSEFTNDDKVRLLPKCNHGFHVPCIDKWLSSHSSCPKCRQCLIETSHKIVRSQPGRVVPLLVPVPETIETIIRIDPLEPESLVRNYRGD* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1873 230 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 228 - -
Lan1g1873 230 PANTHER RING-H2 FINGER PROTEIN ATL78 1 228 IPR044602 GO:0016567|GO:0016740
Lan1g1873 230 SMART ring_2 138 179 IPR001841 -
Lan1g1873 230 Pfam Ring finger domain 137 180 IPR001841 -
Lan1g1873 230 SUPERFAMILY RING/U-box 116 185 - -
Lan1g1873 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 184 IPR013083 -
Lan1g1873 230 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Lan1g1873 230 CDD RING-H2_PA-TM-RING 137 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1873 Lan-Chr1 33908397 33909642 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1873 29 184 C3H Transcription Factor Family AT3G10910 44.654 1.74e-38 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1873 K19040 - gmx:100527126 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0677 12 13578051 13578855 Lan1g1873 1 33908397 33909642 LSH
Lan1g1873 1 33908397 33909642 Lan1g1572 1 26597809 26598552 LSH
Lan1g1873 1 33908397 33909642 Lan15g0539 15 12521876 12522715 PCT
Lan1g1873 1 33908397 33909642 Lan14g0491 14 10495047 10496716 PCT
Lan15g0539 15 12521876 12522715 Lan1g1873 1 33908397 33909642 PCT
Lan14g0491 14 10495047 10496716 Lan1g1873 1 33908397 33909642 PCT