Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1872 ATGGATGCTGGCGACGAAGCTCCTTCTCCTTTCCCCCTTCTCAAAGACATCTCAAATTTCCGAACTCCTAGACGTCCACCACTCTCTCTCACCGTGAAATCCCCCTCCACCACCTCATTCTTCACCGCTTCCAAACAAACACCTCGCTCCTCCTCCACCTTCCGCCGCCGTCCCCCAAATAAACACTCCACCGCCGCCGCCAGGAAACTCAATGCATTCCAATTAGAACAATCTCAGTCTTCTAGAAAGGCACTAATTAAAAAGGAGCAGTCGCTTAAATCCCTAGCCAAGTCATTAACCGTTTGGCTTAACTTCTTGCTCCAAAACCCTTCCTCATGCGGTTGCCACGTGTCAATCTCTGAAGGTGTTGGTTCCGCTGCGCCGTTGACTAACGGCAAGAGAGACAGTGCTCCTGGAGTTTCTGTTGGAGTTGATTCCACGTGGCGAATTCCCAAGCGCCAGAGGAAGACGTGTTCGCGTGATGAGAAAGAGAACTGTACTGTTAGTAAAGAGAATGGTCGAGTGGAGTTGCCTTATTCGACTTTTTCGAACTTGAAGGAGTCTCTCAAGGATGTGTGCAGTTTCGATGATTTGAAGCAGCGAATGAAGGTTTATCTAAGCCTCTCAAGTTGTAAAGAGATCTTTCAAACATTGAATCCAGTTGCTAAGGCAATTGATGATGGAAGGCTGACTTTGAAGGCACATTGCCCGATAGTAACAGATGTTGGGTTAAAGGATAAGGCCACAAGAATCCTCATGTGTTATAATCCGATTTGGCTCCGAATTGGATTATATATAATTTTTGGTGGTGACTCTTTGTTGTTAAATGGCAAAGTTGATTCTGATGAAGATGTTGTATTTTTGAGAATGGTCATTGATAAGCTATTCTTTTCACACGAGGGTCTGGCAAAACAATATGTTTATAACAAAATGGTCGAAGGCGTATATAGGTCAGGTTACTATGAGAATTTAGGGAAAGTGATCCTTAAGAGAATTTTGTTACTTGTGCTTTTCTTGGATAGAGCTAAATGTCAAAGTTGCCTCCCACTCGAATATGGTATCGATGGATTAGATGGAGGATCCCCTTTGTTATTCAAAGCAGAATCCTGGATAAAATCAAGTAATCAAGTGATCCATGAATTTCTATCGTCTGATGTAATGCATGGAGAAGGCAATCTTCTAGCACATTTGGTAATTTTAAGGTACAAAGTATCTCATCAGCAGGGATCTCTTGTTGAGTATGATTTCAATGTCAGTGATTTATTTGTAGATCTTCAGGATGGAATAAAACTGTGTAGAGCTATTCAGCTATTGCAACATAATTCTTCTATCATCATGAAAATTGCAGTTCCCTCAGATACAACTAAGAAAAAAATGGCAAATTGTGTTCTTGCCCTTCAATATCTTAGACAAGCGGGTGTCTCACTGCAAGATGAAGATGGGATGATGATTGTGGCAGATGACCTTGTTAATGGAGATAAGGAACTTACACTTTCCATGCTTTGGAATATGTTTGTTCACTTGCAGCTTCCTCTTTTGGTTGACAAAAGAAGTTTAGCTGCGGAAATTTCTAAAATTCGAGGACTTAGCACGGACCTTACAAACAGTGCAAATTGTAGTTCTCTGGAATTGCTTTTGAACTGGATTCGGGCCGTTTGTGAAAATTATGGCTGTGAAGTTGACAATTTTCGTTCCCTGGTTGATGGCAAAGCTATCTGGTGCATACTTGATTATTACTTCCAGAAGGTACTTCATGATTCCGGTTCATTGAAGGAAGTTAAAATGAAAAGTGTCAAGTCATCAATTGTGTCAGTCCATGATTATTCAGATGCACTGTACAATTTTATATTGTCTCAGAAATTGGCCACATTACTGGGGAATTTTCCAGAGGTACTTCAAATAAGCGAGCTACTTGAATACAATGGTGCTTGCAATGATCATAGTGTGGTGATATTGTTGGTTTTCCTAGCAAGCCAATTATTTGTCAAGAAAAATGTGGATCACTTAAATTTCCATAAGCTCCTAGGCTTTGATTGCCACAGTCCCTACCGTAGACATTTGAGGATGGTAGAGTGCCTTTCAAGTTCTAAACCTGTCCAAAACCCAGATGCTTCAGATGTGCTTGTGAATGAAGATGCAACAAGAAAATTCAGGGCCATCCAGGCTTGGTGGCAAGATATGGCCGAACGAAACCAAATCCTGAAACCAGCTATCTCTGATTTGCAGACATCCAAAATTATTGAGTGCAGCACAAACATTAGAAGAGAAAATGCTGCAAGAACAATACAATCTCATATCAGAGGATTGGTTGTACGTCACAAGTTTCTGAAGGTGAAAAATGCAGTTTCCCTTTTGCAAACTGTTTTCAGAGCATGGCTAAAAGTAAGGCTGGAGTCAAGATGCTTGATACCCACCACCATTCCAGCCTACAAATTTTCACATGAAATACTGAGACAACCAGAAACATATCAGAGATATGCCATGCTTTTCGTTCATAGACATTCCTTTTTGAGATTGAAGAGATCAACACAGCTTATCCAGCAAAGAGTGAGGAGTTGGCTCTGTTGGAGGCATCAGCGGCTGCAAGGATGTAGTATAAAACTTATGGCTTCAGATCCAGTCACTGCTGCTACTATTGTTCAAAAATTTGTTCGTGGTTGGATAGCACGATCTGGATATATTCGTCAGCTGAATCAGAAAGATAAAGCATTATATTTAGCACAGAAGAAAGTTATATTAGATCTTCAAATAAATGCAGCTCTTACTATTCAGCATGCCTGGAAGAAGTTCAAGTGCTGCAAGTCTACTCAGAAGCAGCACTATTTTGCAACTAAAATTCAATGTAATTTCCGTAGGTGGTTATCGAGAAAAAGATTTTTACAACAGATTCAATCTGTAGTAAAAATTCAATCTTCTTTTCGAATGTGGAGATGCATAAAGGCTTTTCAGCACTTCAAAATTGCGTTTAAGGCAGCTATTGTCATTCAGTCTTGTTTACGTGGATGGCTTGCACGGAAGAAAGCTTATGCACATAAGAATCACGTTGTCGAAATTCAAAGGCAATGTCGTGGTTGGCTGGTAAAACGGGACTTCTTGTTGCAAACAGATGCTGTAGTTAAGATCCAGTGTGTAATTCGAAGTTTGAAATGCCAGAAAGCTCTTGATTGTCAGAAAGTTGCTGCATCGAAGATCCAGTGCTTTATCAGGGGGCATTTATCTCGAAATCGGCTATTAGGTGGTGCTTCACAGTTATGCGCAATCATTCCTGTTAGTTACATTTCAAGACCAATTGGCTGTTGTAGTTTTCAATTAGAACTATACTTGACTTCAGTAAAGAAATTGCAACGATGGTGGAAGGGTATCTTGTTGCTTAAAATTATGAATAAGTCAGCCATCGTCATTCAGTCATGCACTCGTGGGTGGATAGCCAGGCAAAAATCAACTGTTCACAGACACCTTATTGCCCCTCAAGCTTTGTATTGCCAGAATGATGCTGCATTGAAGATCCAATGCTTTATTAGGGGGCATTTAACTCGAAACCTACTGTTAGGCAATGCTTCTAAGTTGCATGCTGTCATTCCTGCTGGTCTCAATTCAAGACCAATTGGCTGTTATAGTTTTCAACTGGAACTATTCTTGATTTCAGTTGTGAGGTTGCAACGGTGGTGGAAGCGTGTCTTGTTACGTAGATTGATGACGAAGTCTGCCATTATTATTCAGTCTTGTGCTCGTGGGTGGATGGCCAAGCGAAAGGCAACTATTCATAGACACAATATAGCTGTCATTCAATCCTGCTGGAAAGGTTACCTTGCACGTAAAGAGTCAAAACAACAGCTATTAGATTTACGTTTGAGACTGCAGGAGTCTGCCAGAAATGTGGAAGATAGTAAGCGCCTCATAAACAGACTCTTAGCAGCTCTTTCTGAGTTACTTAATATGAAGAGTGTAAGCGACATCCTTCATACTTGTTCAACACTAGATATGGCTACAGGATATTCTCAGAAATGTTGTGAAGAACTTGTGGCAGCAGGGGCAATTGTCACCTTGTTGAGGCTAACTCGATCACTAAGTCGGAGTAAACCTGATCAGGAGGTTCTAAAGCATGCTCTGTCAACTCTTCGAAACCTTGCCCGCTATCCTCATCTACTACAAGTCTTGATCCAGACTCGTGATTCTCTACAGATCGTTGTCATGGAGTTATTGAGGAATAAGGAGGATGGCTACTTCATTGCTTCTGAACTATTGAAGAAGATATGTTCAACTCATATTGGAGCTGAGGCATTACTCAAATCACCTGCCCTACTTAAACGGCTGCACGGTCTCGTTGAGGAGCTTACAAGAAAGGCAGTTTATGAGAAAAGAAATACTAGGGATCCTAGTCCAATTATTAGAGAGAACAAAGAATGGAGATTAAAGGAAGTTGTTGAGTGA 4431 0.4092 MDAGDEAPSPFPLLKDISNFRTPRRPPLSLTVKSPSTTSFFTASKQTPRSSSTFRRRPPNKHSTAAARKLNAFQLEQSQSSRKALIKKEQSLKSLAKSLTVWLNFLLQNPSSCGCHVSISEGVGSAAPLTNGKRDSAPGVSVGVDSTWRIPKRQRKTCSRDEKENCTVSKENGRVELPYSTFSNLKESLKDVCSFDDLKQRMKVYLSLSSCKEIFQTLNPVAKAIDDGRLTLKAHCPIVTDVGLKDKATRILMCYNPIWLRIGLYIIFGGDSLLLNGKVDSDEDVVFLRMVIDKLFFSHEGLAKQYVYNKMVEGVYRSGYYENLGKVILKRILLLVLFLDRAKCQSCLPLEYGIDGLDGGSPLLFKAESWIKSSNQVIHEFLSSDVMHGEGNLLAHLVILRYKVSHQQGSLVEYDFNVSDLFVDLQDGIKLCRAIQLLQHNSSIIMKIAVPSDTTKKKMANCVLALQYLRQAGVSLQDEDGMMIVADDLVNGDKELTLSMLWNMFVHLQLPLLVDKRSLAAEISKIRGLSTDLTNSANCSSLELLLNWIRAVCENYGCEVDNFRSLVDGKAIWCILDYYFQKVLHDSGSLKEVKMKSVKSSIVSVHDYSDALYNFILSQKLATLLGNFPEVLQISELLEYNGACNDHSVVILLVFLASQLFVKKNVDHLNFHKLLGFDCHSPYRRHLRMVECLSSSKPVQNPDASDVLVNEDATRKFRAIQAWWQDMAERNQILKPAISDLQTSKIIECSTNIRRENAARTIQSHIRGLVVRHKFLKVKNAVSLLQTVFRAWLKVRLESRCLIPTTIPAYKFSHEILRQPETYQRYAMLFVHRHSFLRLKRSTQLIQQRVRSWLCWRHQRLQGCSIKLMASDPVTAATIVQKFVRGWIARSGYIRQLNQKDKALYLAQKKVILDLQINAALTIQHAWKKFKCCKSTQKQHYFATKIQCNFRRWLSRKRFLQQIQSVVKIQSSFRMWRCIKAFQHFKIAFKAAIVIQSCLRGWLARKKAYAHKNHVVEIQRQCRGWLVKRDFLLQTDAVVKIQCVIRSLKCQKALDCQKVAASKIQCFIRGHLSRNRLLGGASQLCAIIPVSYISRPIGCCSFQLELYLTSVKKLQRWWKGILLLKIMNKSAIVIQSCTRGWIARQKSTVHRHLIAPQALYCQNDAALKIQCFIRGHLTRNLLLGNASKLHAVIPAGLNSRPIGCYSFQLELFLISVVRLQRWWKRVLLRRLMTKSAIIIQSCARGWMAKRKATIHRHNIAVIQSCWKGYLARKESKQQLLDLRLRLQESARNVEDSKRLINRLLAALSELLNMKSVSDILHTCSTLDMATGYSQKCCEELVAAGAIVTLLRLTRSLSRSKPDQEVLKHALSTLRNLARYPHLLQVLIQTRDSLQIVVMELLRNKEDGYFIASELLKKICSTHIGAEALLKSPALLKRLHGLVEELTRKAVYEKRNTRDPSPIIRENKEWRLKEVVE* 1477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1872 1476 SMART iq_5 1033 1055 IPR000048 GO:0005515
Lan1g1872 1476 SMART iq_5 1126 1148 IPR000048 GO:0005515
Lan1g1872 1476 SMART iq_5 1254 1276 IPR000048 GO:0005515
Lan1g1872 1476 SMART iq_5 1010 1032 IPR000048 GO:0005515
Lan1g1872 1476 SMART iq_5 872 894 IPR000048 GO:0005515
Lan1g1872 1476 SMART iq_5 961 983 IPR000048 GO:0005515
Lan1g1872 1476 SMART iq_5 1056 1078 IPR000048 GO:0005515
Lan1g1872 1476 SMART iq_5 1231 1253 IPR000048 GO:0005515
Lan1g1872 1476 SMART iq_5 1161 1183 IPR000048 GO:0005515
Lan1g1872 1476 SMART iq_5 777 800 IPR000048 GO:0005515
Lan1g1872 1476 SMART iq_5 754 776 IPR000048 GO:0005515
Lan1g1872 1476 SMART iq_5 987 1009 IPR000048 GO:0005515
Lan1g1872 1476 SMART iq_5 938 960 IPR000048 GO:0005515
Lan1g1872 1476 Coils Coil 1272 1292 - -
Lan1g1872 1476 Gene3D - 1279 1470 IPR011989 -
Lan1g1872 1476 SMART arm_5 1333 1378 IPR000225 GO:0005515
Lan1g1872 1476 ProSiteProfiles IQ motif profile. 1057 1086 IPR000048 GO:0005515
Lan1g1872 1476 SUPERFAMILY ARM repeat 1301 1442 IPR016024 -
Lan1g1872 1476 Pfam IQ calmodulin-binding motif 1060 1077 IPR000048 GO:0005515
Lan1g1872 1476 Pfam IQ calmodulin-binding motif 943 959 IPR000048 GO:0005515
Lan1g1872 1476 Pfam IQ calmodulin-binding motif 990 1007 IPR000048 GO:0005515
Lan1g1872 1476 Pfam IQ calmodulin-binding motif 757 775 IPR000048 GO:0005515
Lan1g1872 1476 Pfam IQ calmodulin-binding motif 964 983 IPR000048 GO:0005515
Lan1g1872 1476 Pfam IQ calmodulin-binding motif 876 893 IPR000048 GO:0005515
Lan1g1872 1476 Pfam IQ calmodulin-binding motif 1258 1274 IPR000048 GO:0005515
Lan1g1872 1476 Pfam IQ calmodulin-binding motif 1233 1251 IPR000048 GO:0005515
Lan1g1872 1476 Pfam IQ calmodulin-binding motif 1164 1180 IPR000048 GO:0005515
Lan1g1872 1476 Pfam IQ calmodulin-binding motif 1016 1031 IPR000048 GO:0005515
Lan1g1872 1476 Pfam IQ calmodulin-binding motif 1129 1146 IPR000048 GO:0005515
Lan1g1872 1476 ProSiteProfiles IQ motif profile. 1255 1283 IPR000048 GO:0005515
Lan1g1872 1476 ProSiteProfiles IQ motif profile. 755 783 IPR000048 GO:0005515
Lan1g1872 1476 ProSiteProfiles IQ motif profile. 1232 1260 IPR000048 GO:0005515
Lan1g1872 1476 Gene3D - 939 988 - -
Lan1g1872 1476 Gene3D - 1124 1191 - -
Lan1g1872 1476 Gene3D - 1231 1278 - -
Lan1g1872 1476 Gene3D - 1035 1079 - -
Lan1g1872 1476 Gene3D - 874 938 - -
Lan1g1872 1476 Gene3D - 754 802 - -
Lan1g1872 1476 Gene3D - 989 1034 - -
Lan1g1872 1476 SUPERFAMILY Calponin-homology domain, CH-domain 334 591 IPR036872 -
Lan1g1872 1476 ProSiteProfiles IQ motif profile. 1127 1156 IPR000048 GO:0005515
Lan1g1872 1476 ProSiteProfiles IQ motif profile. 939 968 IPR000048 GO:0005515
Lan1g1872 1476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 990 1077 IPR027417 -
Lan1g1872 1476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1215 1279 IPR027417 -
Lan1g1872 1476 Pfam Calponin homology (CH) domain 417 507 IPR001715 GO:0005515
Lan1g1872 1476 ProSiteProfiles IQ motif profile. 990 1017 IPR000048 GO:0005515
Lan1g1872 1476 PANTHER UNCHARACTERIZED 7 1154 - -
Lan1g1872 1476 PANTHER UNCHARACTERIZED 1151 1476 - -
Lan1g1872 1476 PANTHER ABNORMAL SPINDLE MICROTUBULE ASSEMBLY 1151 1476 - -
Lan1g1872 1476 PANTHER ABNORMAL SPINDLE MICROTUBULE ASSEMBLY 7 1154 - -
Lan1g1872 1476 Gene3D - 537 661 IPR036872 -
Lan1g1872 1476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 905 1009 IPR027417 -
Lan1g1872 1476 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1344 1377 IPR000225 GO:0005515
Lan1g1872 1476 MobiDBLite consensus disorder prediction 29 59 - -
Lan1g1872 1476 MobiDBLite consensus disorder prediction 1 63 - -
Lan1g1872 1476 ProSiteProfiles IQ motif profile. 1011 1040 IPR000048 GO:0005515
Lan1g1872 1476 ProSiteProfiles IQ motif profile. 1162 1191 IPR000048 GO:0005515
Lan1g1872 1476 Gene3D - 399 510 IPR036872 -
Lan1g1872 1476 ProSiteProfiles Calponin homology (CH) domain profile. 397 509 IPR001715 GO:0005515
Lan1g1872 1476 ProSiteProfiles IQ motif profile. 875 902 IPR000048 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1872 889 1065 CAMTA Transcription Factor Family AT3G16940 25.131 1.69e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1872 K16743 - gmx:100817636 1596.64