Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1868 ATGCATGCTTCAACTACCTTTACTTCACACTATGACCATGAACTTCTTGGGGTCTCCCACTATAGGAGGTTACTCCTTCAAAACCTTAACCTATCAGCAAACTCAGCCAGCCAACCAAATACCATAAACAACCACAACTCAACAAATTTATACCTTGGAAGCCATAATTTTGATTCAAATGTTGTCATGGTTCTCTCAGTCCTATTGTGTGCTCTTATTTGCTCACTAGGTTTGAACTCCATTATAAAGTGTGCCTTAAGATGTTCAAACTTAGCCATTCATATTGACTCATCTAGCACAAGTAACCCTCCATCTGGATTAGCCAACACAGGAATCAAGAAGAAAGCTCTTAAGACTTTCCCTATAGTGACCTACTCAGCTGGGTTGAATCTTCCAAATTTGGACACTGAATGTGTGATATGTCTCTCAGATTTCACCAATAATGATAAGGTGCGACTTTTGCCAAAGTGCAACCATGGTTTTCATGTTCCTTGCATTGATGAATGGCTTAGTTCACACGCATCTTGCCCTAAGTGTAGACAGTGTCTTATTGAGACTTGCCACAAGATTGTTACATCACAAGCAACTGTGGTGCCAGAAACCATTATAAGAATTGAACCACTTCAGTTAGAAGATTTTGTTCGTAACTATAGGGAAACAAACTAA 666 0.3934 MHASTTFTSHYDHELLGVSHYRRLLLQNLNLSANSASQPNTINNHNSTNLYLGSHNFDSNVVMVLSVLLCALICSLGLNSIIKCALRCSNLAIHIDSSSTSNPPSGLANTGIKKKALKTFPIVTYSAGLNLPNLDTECVICLSDFTNNDKVRLLPKCNHGFHVPCIDEWLSSHASCPKCRQCLIETCHKIVTSQATVVPETIIRIEPLQLEDFVRNYRETN* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1868 221 Pfam Ring finger domain 137 180 IPR001841 -
Lan1g1868 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 184 IPR013083 -
Lan1g1868 221 PANTHER RING-H2 FINGER PROTEIN ATL78 1 220 IPR044602 GO:0016567|GO:0016740
Lan1g1868 221 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Lan1g1868 221 SUPERFAMILY RING/U-box 116 185 - -
Lan1g1868 221 CDD RING-H2_PA-TM-RING 137 180 - -
Lan1g1868 221 SMART ring_2 138 179 IPR001841 -
Lan1g1868 221 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1868 Lan-Chr1 33846448 33847289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1868 42 189 C3H Transcription Factor Family AT1G76410 47.333 3.76e-41 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1868 K19040 - gmx:100527126 272.322