Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1857 ATGGATTTCGACGAGTACGAGTATCTGGAGAAGACAGTGGAGGAGCAAGAAGACAACGATTCCTTGAAGAAGAAGGAGAGCGAGAGGAGTTACCGGAAGCGCGATGTCGACGATGATCTGGACGCCGCCGATGACCGCCGCAGGAGCAAGCGGTCCAAGGACGACGACGAGAACGGTTCGTCGAAGAAAGATAGGGATAGAGATAGGAGCAGTAGAGAGAGGGACAGAGATAGGAGCAGCAGAGAAAGAGAAAAACCAAGGGATAAGGATAGGGATAGAGAAAGGAGGGATAGGAGAGATAGGGATAAGGATAGGGACAAGGATAAGGAGAAGGATAAGGATAAGGAGAAGTATAGGGAGAGGGAGAAGGAGAGGGAAAAAGAACGCGCTGAGAGGAGGGAGAAGGAGAGGGAGAGAGAAAGAGAGGAGAGGGAGAGATCTAGAAGGAGCAGGAGTCGTTCTGAGAGAGAAATCAGAGAACGAGATTTCGAAGCGCGAGATGGCCGGAGAGGATTTAGGGATAAGAAAGAGGCTGCAGAACCTGAGGCAGACCCAGAAAGGGACCAGAGAACTGTTTTTGCCTACCAGATGCCCTTAAAAGCAACAGAGAGAGATGTATATGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTCCGACTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCGATGGCAATTGCTCTCTCTGGCCAACTTCTTTTTGGGCAACCTGTAATGGTCAAACCTTCTGAGGCTGAGAAAAATCTCGTTCAATCTACTGCTTCCAGTGGAGCTGCTGGTGTAGTAGGACCATATGGAGCTGTGGACAGAAAACTGTATGTGGGGAACCTTCACTTCAACATGACTGAGAGTCAGCTGCGAGAGATTTTTGAGCCATTTGGTCCGGTGGAGGTTGTACAGCTTCCTCTTGACTTGGAGACAGGACACTGCAAGGGTTTTGGGTTTATTCAATTTGCCCAACTTGAGCATGCCAAGGCAGCCCAGAGTTTAAATGGAAAGTTGGACATTGCTGGAAGGATTATCAAGGTTTCATCTGTAACTGATCATGTTGGAAACCAAGATACAACTGCAAAATCTACTGACTTTGATGATGATGAAGGTGGAATGGTTTTAAATGCGCAATCAAGAGTAGAACTCATGCGTAAGCTGGCTGGTGATGCTGCAAGTGCTGGTGTCCCCATGGTGAATGGTTCAGCTCCTGCTGCTATTAGCTTGCCTATTGGTAATCCAGGAACAGTGCCTGCAGCAGCCTTCCCATCACTAGTTATTCCTACTCCAGTGGCAGAACCTGAAGGAATCCCTAGCGAGTGTTTGCTGTTGAAGAATATGTTTGATCCAAGCACTGAGATGGAGCCAGATTTTGATTTAGACATCAAAGAAGATGTAGAAGAGGAGTGCTCTAAGTATGGCCGGGTGAAGCATATTTATGTCGACAAAAGAAGTGCAGGTTTTGTGTATTTGCGGTTTGAAACAGTGAAAGCATCAAGTGATGCTCAACGTGCAATGCACAACAGATGGTTTGCACGCAGATTGATTTCAGCTATCTACATGCAACCTCAGGAATATGAAGCCAAGTTTAAAGGGGAATCTTGA 1659 0.4678 MDFDEYEYLEKTVEEQEDNDSLKKKESERSYRKRDVDDDLDAADDRRRSKRSKDDDENGSSKKDRDRDRSSRERDRDRSSREREKPRDKDRDRERRDRRDRDKDRDKDKEKDKDKEKYREREKEREKERAERREKEREREREERERSRRSRSRSEREIRERDFEARDGRRGFRDKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKNLVQSTASSGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFIQFAQLEHAKAAQSLNGKLDIAGRIIKVSSVTDHVGNQDTTAKSTDFDDDEGGMVLNAQSRVELMRKLAGDAASAGVPMVNGSAPAAISLPIGNPGTVPAAAFPSLVIPTPVAEPEGIPSECLLLKNMFDPSTEMEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLRFETVKASSDAQRAMHNRWFARRLISAIYMQPQEYEAKFKGES* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1857 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 481 534 IPR000504 GO:0003723
Lan1g1857 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 259 IPR000504 GO:0003723
Lan1g1857 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 361 IPR000504 GO:0003723
Lan1g1857 552 MobiDBLite consensus disorder prediction 1 190 - -
Lan1g1857 552 CDD RRM2_RBM23_RBM39 294 366 - -
Lan1g1857 552 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 552 - -
Lan1g1857 552 SUPERFAMILY RNA-binding domain, RBD 292 544 IPR035979 GO:0003676
Lan1g1857 552 PANTHER CC1-LIKE SPLICING FACTOR 1 552 - -
Lan1g1857 552 TIGRFAM SF-CC1: splicing factor, CC1-like family 80 548 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lan1g1857 552 SUPERFAMILY RNA-binding domain, RBD 183 275 IPR035979 GO:0003676
Lan1g1857 552 Gene3D - 288 384 IPR012677 -
Lan1g1857 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 267 IPR000504 GO:0003723
Lan1g1857 552 CDD RRM3_RBM39_like 457 539 - -
Lan1g1857 552 Gene3D - 453 552 IPR012677 -
Lan1g1857 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 370 IPR000504 GO:0003723
Lan1g1857 552 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 385 476 IPR029123 -
Lan1g1857 552 MobiDBLite consensus disorder prediction 15 189 - -
Lan1g1857 552 SMART rrm1_1 293 366 IPR000504 GO:0003723
Lan1g1857 552 SMART rrm1_1 459 537 IPR000504 GO:0003723
Lan1g1857 552 SMART rrm1_1 191 263 IPR000504 GO:0003723
Lan1g1857 552 Gene3D - 183 276 IPR012677 -
Lan1g1857 552 CDD RRM1_RBM39_like 191 263 - -
Lan1g1857 552 Coils Coil 111 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1857 Lan-Chr1 33696967 33704229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1857 183 356 Eukaryotic Initiation Factors Gene Family AT1G22760 30.939 3.43e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1857 K13091 - gmx:100802446 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0670 12 13497715 13503979 Lan1g1857 1 33696967 33704229 LSH