Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1835 ATGAATTCTTCATCTTCAGCATTTGTTTCCTCAAGAAGAATGGGTGCATATGACCCTATTAACCAAATTACTATGTGGGAAGAAAATTTCGTAACTAATGGTACTTTAATTGATGCAGGAACTAAGTTAGATAATCAGTCAGTGGATACTTCTAATGCAATAGTGAGAACATCTGAGAAGTATGACCAAGAAGCTAACAGGCTTAATGATAAGATACAAAGACGTCTCGCTCAAAATCGAGAGGCTGCTCGCAAGAGTCGTCTGAGGAAAAAGGCCTATGTTCAACAATTAGAATCATGCCGTTTGAAGTTGGTGCAGGTAGAGCAAGAATTTGATCATGCAAGACAACAGGGATTGTATACTGGTGCTGGATTGGGTTCTAATAGTTTCGGTTTTGTTGGCTCTGTAAATTCAGGAATAATTACCTTTGAGATGGAGTATGGACACTGGGTAGAAGAGCAAAATAGACAAATCTTGGAACTTAGAAGTGCCTTAAGTGCACATATGGGTGACACAGAATTTGGAACACTTGTAGATGGCATCATGAACCACTATTTCAAACTCTTTCGCATGAAATCTGCTGCTGCGAAAGAAGACGTTTTCTATGTCAAGTCAGGCATGTGGAAAACAACAGTTGAACGATTTTTCATGTGGCTCGGAGGCTTTCGCCCTTCTGAAGTTCTAAAGGTTCTGATCCCACTGATCGAACCCTTGACGGAGCAACAACGAGGTGGTGTCTGTAACCTTTTAAAATCATGTCAACAAGCAGAAGATGCCCTTTCACAAGGTATGGACAAACTGGAGCAAATACTCGCGGAAACCGTCACAGCAAGACAACTCGACGAAGAAGCTTACATTCCACAGATGGTTGCTGCAATGGAGAGGTTGGAATCTCTTGTGAGATTTGTGAACCAGGCTGATCATCTAAGGCAGGAAACATTGCAGCAAATGTCAAGAGTACTTACCTTCCGTCAATGTGCTCGATGGCTGCTCCTTTTCGGGGAATATTTCCAACGCCTCCGAACATTGAGCTCACTTTGGGCTAATTGTCCTCGTCAAACAAATGATTAG 1071 0.4202 MNSSSSAFVSSRRMGAYDPINQITMWEENFVTNGTLIDAGTKLDNQSVDTSNAIVRTSEKYDQEANRLNDKIQRRLAQNREAARKSRLRKKAYVQQLESCRLKLVQVEQEFDHARQQGLYTGAGLGSNSFGFVGSVNSGIITFEMEYGHWVEEQNRQILELRSALSAHMGDTEFGTLVDGIMNHYFKLFRMKSAAAKEDVFYVKSGMWKTTVERFFMWLGGFRPSEVLKVLIPLIEPLTEQQRGGVCNLLKSCQQAEDALSQGMDKLEQILAETVTARQLDEEAYIPQMVAAMERLESLVRFVNQADHLRQETLQQMSRVLTFRQCARWLLLFGEYFQRLRTLSSLWANCPRQTND* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1835 356 Coils Coil 65 85 - -
Lan1g1835 356 Pfam bZIP transcription factor 70 99 IPR004827 GO:0003700|GO:0006355
Lan1g1835 356 SMART brlzneu 67 138 IPR004827 GO:0003700|GO:0006355
Lan1g1835 356 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 69 99 IPR004827 GO:0003700|GO:0006355
Lan1g1835 356 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 74 89 IPR004827 GO:0003700|GO:0006355
Lan1g1835 356 PANTHER TRANSCRIPTION FACTOR TGA9 1 354 - -
Lan1g1835 356 ProSiteProfiles DOG1 domain profile. 140 350 IPR025422 GO:0006351|GO:0043565
Lan1g1835 356 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 354 - -
Lan1g1835 356 Pfam Seed dormancy control 158 232 IPR025422 GO:0006351|GO:0043565
Lan1g1835 356 Coils Coil 90 117 - -
Lan1g1835 356 Gene3D - 70 119 - -
Lan1g1835 356 SUPERFAMILY Leucine zipper domain 71 99 IPR046347 GO:0003700|GO:0006355
Lan1g1835 356 Coils Coil 253 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1835 Lan-Chr1 33384246 33387624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1835 1 348 Calmodulin-binding Proteins AT5G10030 64.426 2.79e-167 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lan1g1835 DOG1 3.3e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1835 1 33384246 33387624 Lan15g0080 15 555028 561098 PCT
Lan1g1835 1 33384246 33387624 Lan3g0992 3 21625058 21629830 PCT