Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1816 ATGGATGAGGAAGAGCACGAGGTGTACGGAGGGGAAATCCCTGACGTCGAAGGAGATCATGACAATCCTGACGTTGACATGTCTGCCGCCGATGATGACGCCGCCGCCGTGAAGGAGCTTGACGAGATGAAGCGGCGGTTGAAGCAGATGGAAGACGAAGCCGCCGCTCTCCGTGAGATGCAAGCTAAGGTCGACAAAGAAATTGGCTCTGTTCAAGATCCTGCTGCTGCTGCTTCTCAGGCAAACAAGGAGGAGTCAGATACTCGATCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTGCAACAACACTTTCAACCTTGTGGTACAGTGAACAGAGTCACCATCCTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCATATGTGGAATTTGTTGAAGTTGAAGCTGTTCAAGAGGCTCTTCTCCTGAATGAATCTGAATTACATGGCCGTCAATTGAAGGTTCTACCCAAGAGAACTAATGTTCCGGGAATGAAACAACATCGTGCTAGGCGCTACAATCCTTACATGGCTTATGGCTTCAGGAGGCCATATCCTCCTCCTTACTTTTACTCCCCTTATGGATATGGGAAGGCTCCGAGGTTTACAAGGGCAACTCGGTACGTGCCCTATTACTAA 654 0.4862 MDEEEHEVYGGEIPDVEGDHDNPDVDMSAADDDAAAVKELDEMKRRLKQMEDEAAALREMQAKVDKEIGSVQDPAAAASQANKEESDTRSVFVGNVDYACTPEEVQQHFQPCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQHRARRYNPYMAYGFRRPYPPPYFYSPYGYGKAPRFTRATRYVPYY* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1816 217 SUPERFAMILY RNA-binding domain, RBD 78 187 IPR035979 GO:0003676
Lan1g1816 217 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 215 - -
Lan1g1816 217 Coils Coil 33 67 - -
Lan1g1816 217 SMART rrm1_1 90 161 IPR000504 GO:0003723
Lan1g1816 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Lan1g1816 217 CDD RRM_II_PABPs 90 161 - -
Lan1g1816 217 PANTHER - 1 215 - -
Lan1g1816 217 MobiDBLite consensus disorder prediction 1 28 - -
Lan1g1816 217 MobiDBLite consensus disorder prediction 11 28 - -
Lan1g1816 217 Gene3D - 15 176 IPR012677 -
Lan1g1816 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 165 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1816 Lan-Chr1 33021153 33025501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1816 90 160 Eukaryotic Initiation Factors Gene Family AT2G36660 34.722 6.08e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1816 K14396 - gmx:100789721 343.584