Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1812 ATGAAGAGACTTGGAAGCTCAGATTCTTTGGGTGCACTCATTACAATTTGTCCACAAACAGAGGAACACAATCCGAGGAACAATAACCATGTCTATGGAAGAGAGTTTCAATCCATGTTGGAGGGACTTGATGAGGAAGGTTATAGTATTGAAGAGACAGGGCATCACTCTGAGAAGAAAAGAAGATTAAGCGTGGATCAAGTTAAGGCTTTGGAGAAGAAATTTGAGGTTGAGAACAAACTTGAACCAGAGAGAAAGGTGAAGCTTGCCCAAGAACTTGGGTTGCAGCCTAGACAAGTTGCAGTTTGGTTCCAAAATCGTCGTGCTAGATATAAAACCAAGGTTTTGGAAAGGGATTACTGTGTTCTCAAAGCCAATTATGATGCACTTAAACTTAACTATGATACCCTCCGAAAGGACAATAGTGCCTTACTCAAAGAGATTAAGGAATTGAAATCAAGGGCGGAAGAAGAGAACACTAAAAGCGATGCTACAGTGAAAGAAGAGATGATAACACTGCAACAAGACTCTTCAGAAGACTTGAAACATGACTGTTTCAACAAGAAAAACAATGAAGGGGTAGGAGCTGATTCACTATTCCCTACAGAGTTCAACAGAGACGGTGCTTCAGATAGCGACTTTAGCGCAACTTTGAACGAAGAACAAAACAACAACAGCCCCATTTACAACCCAGCAATTTCATCACCTGGGGTGCTTCAAAATCATAACTTTTTAATGTCTCCTTCACTCAAGTTCAATAATTGTTCATCATCGTCTTCACCTTCTTCTATGAATTGCTTCCAGTTTCAGAAGGGTAATTCTTATCAGGAACAGTATGTGAAGATGGAAGAACACGATTTCTTCAGTGCAGATGAGGCCTGCAATTTCTTCTCAGATGAACAAGCACCAACACTGCAGTGGGATTGTTCTGAGGAATGGAGTCAAGCGAATAAACAGTGA 960 0.4073 MKRLGSSDSLGALITICPQTEEHNPRNNNHVYGREFQSMLEGLDEEGYSIEETGHHSEKKRRLSVDQVKALEKKFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARYKTKVLERDYCVLKANYDALKLNYDTLRKDNSALLKEIKELKSRAEEENTKSDATVKEEMITLQQDSSEDLKHDCFNKKNNEGVGADSLFPTEFNRDGASDSDFSATLNEEQNNNSPIYNPAISSPGVLQNHNFLMSPSLKFNNCSSSSSPSSMNCFQFQKGNSYQEQYVKMEEHDFFSADEACNFFSDEQAPTLQWDCSEEWSQANKQ* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1812 319 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 306 - -
Lan1g1812 319 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 306 IPR045224 GO:0003700
Lan1g1812 319 CDD homeodomain 59 114 IPR001356 GO:0003677
Lan1g1812 319 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Lan1g1812 319 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Lan1g1812 319 Pfam Homeodomain 59 112 IPR001356 GO:0003677
Lan1g1812 319 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Lan1g1812 319 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Lan1g1812 319 Coils Coil 127 168 - -
Lan1g1812 319 Pfam Homeobox associated leucine zipper 114 154 IPR003106 GO:0006355|GO:0043565
Lan1g1812 319 Gene3D - 53 119 - -
Lan1g1812 319 SUPERFAMILY Homeodomain-like 45 114 IPR009057 -
Lan1g1812 319 SMART HOX_1 57 118 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1812 Lan-Chr1 32908809 32911494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1812 1 314 Homeobox Transcription Factor Family AT4G40060 45.238 1.13e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan1g1812 Homeodomain 6.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1812 K09338 - gmx:100796213 420.624