Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1790 ATGGAGATTCATTACAGTCAGAGTTACTTTGAAAAACGTCCAATCATCAAATCCAAGGCTCCTGCAGTTAAATGGGTAAAAGAATGGGTTCCTCAAGATGTTGTAGCAACTGGGGGGAAGTGCATGCTCTTAAGATGGGTAACAGAGGATACCTTGAAGGCCTTGAAAGAAAAGGAAAAAGAACCATCAGCGCCTGAGCCAGAACCAGAGCCAACTACTGAAGTACTGTTCCTTTGCAGCTATGAAGGCTGTGGCAAGACATTTATAGATGCTAGTGCATTGAGGAAGCATTCTCACATCCACGGAGAGCGGCAATATGTTTGCCACTATGAGGGATGTGGAAAGAAATTCCTGGATAGCTCAAAGTTGAAAAGACACTTTCTCATTCATACTGGGGAAAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCCTGGATTTCAACCTGAGGTCTCACATGAAAACGCATTCACAACAGAACTATCATATCTGCCCATACCCGGACTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGAATCCATCAGTGGATGTGACTTCTGTGAGTCATGTGACAAAGTACACTCCACCTTCCGAAAAGCAAACAAAAACTAAACATTCTGGAGCAGCATATGGTTCTGCATCATCTGATCGCCCTTATGCATGTCCTTACGAAGGGTGTGAGAAAGCATACATCCATGAATACAAGCTTAAACTCCATTTGAAAAGGGAGCATCCGGAGCATGACGAGCATGCTCAGGCTAATGCTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTATGGTGGTGGGAAACGTTCAAATGGTAAAGTTCAGAAGCAAAGTAAGCCCAAACCAAACCTGAAGTTGCCTCAGTCAAAAGTTGCAAAACGCAAAGGGTCATCCACTCCCTCTCTTGCCACTTTAGCTGCTATAGCTAAAAAACCTTGGCCTGTGAAAGAGGAAACATATGATGAAGAAGACAGCGAAGAGACAGAAGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCAAAAAACAACGAAGAAGACGATGAAGAAACAGAATATGAAGACTGA 1128 0.4326 MEIHYSQSYFEKRPIIKSKAPAVKWVKEWVPQDVVATGGKCMLLRWVTEDTLKALKEKEKEPSAPEPEPEPTTEVLFLCSYEGCGKTFIDASALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQQNYHICPYPDCGKRYAHEYKLKNHIASHHEKNPSVDVTSVSHVTKYTPPSEKQTKTKHSGAAYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPEHDEHAQANADNEMDEASDQDAYGGGKRSNGKVQKQSKPKPNLKLPQSKVAKRKGSSTPSLATLAAIAKKPWPVKEETYDEEDSEETEEDRDNVEDGWRYAKNNEEDDEETEYED* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1790 375 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Lan1g1790 375 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Lan1g1790 375 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Lan1g1790 375 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Lan1g1790 375 MobiDBLite consensus disorder prediction 338 352 - -
Lan1g1790 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Lan1g1790 375 PANTHER BNAA03G13270D PROTEIN 4 375 - -
Lan1g1790 375 Gene3D Classic Zinc Finger 164 195 - -
Lan1g1790 375 Gene3D Classic Zinc Finger 103 133 - -
Lan1g1790 375 MobiDBLite consensus disorder prediction 194 225 - -
Lan1g1790 375 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Lan1g1790 375 SMART c2h2final6 77 101 IPR013087 -
Lan1g1790 375 SMART c2h2final6 234 259 IPR013087 -
Lan1g1790 375 SMART c2h2final6 166 190 IPR013087 -
Lan1g1790 375 SMART c2h2final6 136 160 IPR013087 -
Lan1g1790 375 SMART c2h2final6 106 130 IPR013087 -
Lan1g1790 375 Gene3D Classic Zinc Finger 206 279 - -
Lan1g1790 375 ProSitePatterns Zinc finger C2H2 type domain signature. 236 259 IPR013087 -
Lan1g1790 375 Gene3D Classic Zinc Finger 77 102 - -
Lan1g1790 375 Gene3D Classic Zinc Finger 134 161 - -
Lan1g1790 375 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Lan1g1790 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 264 IPR013087 -
Lan1g1790 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Lan1g1790 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Lan1g1790 375 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 4 375 - -
Lan1g1790 375 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Lan1g1790 375 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Lan1g1790 375 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Lan1g1790 375 SUPERFAMILY beta-beta-alpha zinc fingers 229 258 IPR036236 -
Lan1g1790 375 MobiDBLite consensus disorder prediction 259 375 - -
Lan1g1790 375 MobiDBLite consensus disorder prediction 188 231 - -
Lan1g1790 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1790 Lan-Chr1 32598068 32602698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1790 7 361 C2H2 Transcription Factor Family AT4G06634 64.456 1.47e-143 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan1g1790 zf-C2H2 0.009 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1790 - - lang:109362995 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0560 12 12339369 12343530 Lan1g1790 1 32598068 32602698 LSH