Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1783 ATGACCTCTGTTCATGACCTAACTGATAATGAAGCTGACAAGCAGCAGCAGTCAGAATCACAGATGCAGCCTTCATCTGAAAATGGAATTTCTGATCCTGGTCTTAGTACCCAGAATGTTCAGTATGCAATACCTGCACAGCTTGGAACTGGGCATGCTATGGCGCCACCTGTGTACCCGTATCAAGATCCTTACTATAGAAGTATCTTTGCTCCGTATGCTACACAACCTTATCCCCCACCACCATATGGTGGACAGCCAATGGTCCAACTTCAGTTAATGGGGATGCAACAAGCTGGTGTTCCCCTCCCTACTGATGCAGTTGAAGAGCCTGTGTTTGTCAATGCAAAGCAATATCATGGTATATTAAGACGTAGACAATCCCGTGCCAAAGCTGAATCTGAAAATAAAGCGATACGGAATCGGAAGCCATACTTGCACGAATCTCGGCATTTGCATGCACTGAAAAGAGCAAGAGGATGTGGAGGTCGATTTCTGAATTCCAAGAAAAATAATAACCAACATAATGGTGACGCATCACCAGACGAATCGGAATCACAGCTCAATGTCAATCTCAGCTCTGATAAAAGTGATCTTCTTTCGGCAGATAGGAATCCCAAAACTACAAAATGA 633 0.4408 MTSVHDLTDNEADKQQQSESQMQPSSENGISDPGLSTQNVQYAIPAQLGTGHAMAPPVYPYQDPYYRSIFAPYATQPYPPPPYGGQPMVQLQLMGMQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKAIRNRKPYLHESRHLHALKRARGCGGRFLNSKKNNNQHNGDASPDESESQLNVNLSSDKSDLLSADRNPKTTK* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1783 210 MobiDBLite consensus disorder prediction 166 210 - -
Lan1g1783 210 MobiDBLite consensus disorder prediction 1 37 - -
Lan1g1783 210 MobiDBLite consensus disorder prediction 14 37 - -
Lan1g1783 210 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 185 IPR001289 GO:0003700|GO:0006355
Lan1g1783 210 Gene3D - 108 169 - -
Lan1g1783 210 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Lan1g1783 210 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Lan1g1783 210 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
Lan1g1783 210 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 2 185 - -
Lan1g1783 210 MobiDBLite consensus disorder prediction 162 210 - -
Lan1g1783 210 MobiDBLite consensus disorder prediction 126 145 - -
Lan1g1783 210 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
Lan1g1783 210 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
Lan1g1783 210 MobiDBLite consensus disorder prediction 126 150 - -
Lan1g1783 210 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 110 165 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1783 Lan-Chr1 32461291 32466540 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1783 2 202 CCAAT-HAP2 Transcription Factor Family AT1G30500 56.650 1.68e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lan1g1783 CBFB_NFYA 7.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1783 K08064 - gmx:100784325 298.13