Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1766 ATGGATGAAGCTCCGGGAAGTTCGAGTTCCCTGCCTCCATTCCTGGCAAAGACTTATGAGATGGTTGATGATCCATCATCGGATTCCGTTGTTTCTTGGAGTGCAAATAGTAAAAGTTTCGTTGTGTGGAATCCTCTAGAATTCGCGAGGGATTTGCTGCCAAAGTTTTTTAAGCACAATAACTTCTCAAGTTTTATCAGGCAGCTGAATACATATGGCTTTAGAAAAATTGACCCTGAACAATGGGAATTTGCAAATGATGATTTTGTAAGAGGGAAACCGCATCTTATGAAGAATATCCATAGACGAAAGCCGGTTCATAGTCATTCTTTACAGAATATCCAATCACAAGGCCCGGTAATGGAGTCTGAAAGGCAGAGTTTAAGAGATGAGGTAGAGAAGCTTAAACATGATAAAGAACTACTTCTTATGGAATTACGGAGATATGAACATGAGTGGCAAACATATGAGATACAAATGCATTGCTCAAAAGATCGTTTGGAAAAATTGGAACAAGCGCAACAAAAGATGGTCTCTTCCATTTCTGAAGTATTGCAGAAACCTGGGAGTGCCTTAAATCTCTGGTCACTAACAGAATCCGTGGATAGAAAACGAAGGTTGCCAAGAAGTGGCTATTTTAGTGATGATGCTAGCATGGAAGATGCTGTTGAAACTTCAGGAACCAGAGAAAATGCAGAAAGTACCCTGGGTTTGACATTAAACATGGAGCGTTTGGATCAGCTTGAGTCATCCTTGGTAGTTTGGGAGAATATTGCAAATTTGGGTGGTTGTACCTTTTTTCATGTTCTTCCGAACTTGGATTTTGATGAATCTACAAGTTGTGCTGTTAGCCCATCTATATCTTGTGAGAAACTAGACGTTGAAGTTCAGCCTACATCTTCTGGAATTGACATGAACTCCGAGCCAGCCGCAGCTGCTGCTCCCGAGCCTGATGCATCAAAAGAACAACCTACAAGAAAAGCTACTGTGGCAACTGGTGTTAATGATGTATTCTGGGAACAATTCTTGACAGAGAATCCTGGTTCATCGGAAGCTCAGGAAGTGCAATCAGAAAGAAAGGATTATGATGGCAGAAAGGATGAAGGAAAATTTTGGCGGATCACAAATAGTCTTCCAGAACAAATGGGGCATGTTGGTCAAGCAGAGAAAACTTAG 1176 0.4116 MDEAPGSSSSLPPFLAKTYEMVDDPSSDSVVSWSANSKSFVVWNPLEFARDLLPKFFKHNNFSSFIRQLNTYGFRKIDPEQWEFANDDFVRGKPHLMKNIHRRKPVHSHSLQNIQSQGPVMESERQSLRDEVEKLKHDKELLLMELRRYEHEWQTYEIQMHCSKDRLEKLEQAQQKMVSSISEVLQKPGSALNLWSLTESVDRKRRLPRSGYFSDDASMEDAVETSGTRENAESTLGLTLNMERLDQLESSLVVWENIANLGGCTFFHVLPNLDFDESTSCAVSPSISCEKLDVEVQPTSSGIDMNSEPAAAAAPEPDASKEQPTRKATVATGVNDVFWEQFLTENPGSSEAQEVQSERKDYDGRKDEGKFWRITNSLPEQMGHVGQAEKT* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1766 391 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g1766 391 Coils Coil 125 152 - -
Lan1g1766 391 MobiDBLite consensus disorder prediction 299 327 - -
Lan1g1766 391 MobiDBLite consensus disorder prediction 354 373 - -
Lan1g1766 391 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g1766 391 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g1766 391 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g1766 391 MobiDBLite consensus disorder prediction 343 391 - -
Lan1g1766 391 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g1766 391 Gene3D - 7 104 IPR036388 -
Lan1g1766 391 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 370 - -
Lan1g1766 391 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g1766 391 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 370 IPR027725 -
Lan1g1766 391 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1766 Lan-Chr1 32238933 32241008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1766 7 391 HSF AT4G18880 50.623 8.55e-119 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lan1g1766 HSF_DNA-bind 2e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0534 12 12069096 12071274 Lan1g1766 1 32238933 32241008 LSH
Lan1g1766 1 32238933 32241008 Lan1g0529 1 6356620 6359002 LSH