Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1753 ATGGATCAGGTAAGAGGAAAAGGTAGTGGTGAGGTTATGGATCATGTTGATGAAGGAGTGGATGAGAATTTGAGCCATTTAGTTGAAGGAGTTGTTACATATGATGCTGTAGCTGGAGGTAGGTTAGGTGAAAGAGATAGTGTAAGTGGTGAAGATAGAACTTCAGAAAAGATGAGCAATGATTCAAGATTGAATAATGACGTAAAAGAGGAAGAGGGGTCTCAAGAAATTAAGGTTGACATGTGTTATCAGAATGATATATTGCATGTGGTTGATCAAGGAAGTAGTTGTAATTCAAGAAATTTGGTTAGAAGGGAAGTACTTGATTCCTGTGTTGTAATAGATTCTTCTTCTCGGGTTGAGAATTCCAATGGAGATAGTATGAAATTGAAGGCAAAAGTTAATGAATCAGGGTTGGGTAATGTATCTATGAATGCACCATTAGGGGTGGTGTCTGAAACAGATAAAAGTTCATCTGTGATTGACGTAAGGTGTGGCGGCTACAAAGCGTTTAGCGAGACTTCGGAAGGTGAAATGATTTGTAGGATTTGTCATCTGGCTTCTGAGCAACTATTAGAAGCTACAGATACCGGAACAACTAATAGTGCTACTAGTACAGATTTGATTCAGCTTGGTTGTGCTTGTAAAGATGAGCTAGGCATTGCACATAGTCATTGTGCTGAGGCATGGTTCAAGCTTAGAGGAAACAGGTTGTGTGAAATATGTGGTGAGACTGCAAAAAATGTTTCTGATGTTACTGAGAATGGATTTATGGAAGAGTTGAACGAAAGTAGATTCGTCGACAGTAGTACCGGTACCTCATCGGGTGGCATGTTTGGTGGATGGTTGCGTGGGCAGCCATTTTGTAACTTCTTAATGGCGTGCCTGGTAATAGCTTTTGTTATGCCATGGTTCTTTCGTGTAAATATTTTTTAG 936 0.3974 MDQVRGKGSGEVMDHVDEGVDENLSHLVEGVVTYDAVAGGRLGERDSVSGEDRTSEKMSNDSRLNNDVKEEEGSQEIKVDMCYQNDILHVVDQGSSCNSRNLVRREVLDSCVVIDSSSRVENSNGDSMKLKAKVNESGLGNVSMNAPLGVVSETDKSSSVIDVRCGGYKAFSETSEGEMICRICHLASEQLLEATDTGTTNSATSTDLIQLGCACKDELGIAHSHCAEAWFKLRGNRLCEICGETAKNVSDVTENGFMEELNESRFVDSSTGTSSGGMFGGWLRGQPFCNFLMACLVIAFVMPWFFRVNIF* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1753 311 ProSiteProfiles Zinc finger RING-CH-type profile. 173 249 IPR011016 GO:0008270
Lan1g1753 311 SMART ringv_2 180 243 IPR011016 GO:0008270
Lan1g1753 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 254 IPR013083 -
Lan1g1753 311 SUPERFAMILY RING/U-box 176 245 - -
Lan1g1753 311 MobiDBLite consensus disorder prediction 42 72 - -
Lan1g1753 311 PANTHER ZINC FINGER, RING-CH-TYPE 1 311 - -
Lan1g1753 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 311 - -
Lan1g1753 311 MobiDBLite consensus disorder prediction 45 72 - -
Lan1g1753 311 Pfam RING-variant domain 181 242 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1753 Lan-Chr1 31898213 31900842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1753 161 310 C3H Transcription Factor Family AT5G05830 38.562 1.54e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1753 - - gmx:100791129 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1753 1 31898213 31900842 Lan4g0300 4 5012651 5015274 PCT
Lan4g0300 4 5012651 5015274 Lan1g1753 1 31898213 31900842 PCT