Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1725 ATGGGAGGAGGTGGTGAAAGGAAAAGAGAAGAGAAACTAAAGAAACAACAATCACTAGCAAAGAAAAAATCTGGTGGATTCGAATCCCTAGGTTTGAATCCAAATGTATTCAAAGGTGTTAGACGCAAAGGTTATAAAGTTCCTACTCCGATTCAGAGGAAAACAATGCCTACTATATTATCTGGTTCTGATGTTGTTGCTATGGCTCGTACTGGTTCTGGTAAAACGGCAGCGTTTCTTATTCCTATGCTTCAACGTCTTGATCAACATCTTCCTCAGGGTGGTGTTAGAGCACTTATTCTTTCTCCTACTCGTGATTTGGCTCTTCAGACTCTTAAGTTTACTCAAGAGCTTGGTCACTTCACTGACCTTCGTGTTAGTTTGTTAGTTGGTGGGGATAGTATGGAAGGCCAGTTTCAGGAGTTATCTCAGAATCCAGACATTATAATTGCTACCCCTGGTAGGCTTATGCACCATTTGTCTGAGGTGGATGACATGTCGTTGCGTACTGTCGAGTATGTTGTTTTTGATGAGGCTGATTCTTTATTCGGCATGGGTTTCGCTGAGCAGTTGCATCAGATTCTCACTCAGCTTGGTGACAACCGTCAGACCTTGCTTTTCAGTGCTACACTACCCAGTGCACTTGCTGAATTTGCTAAGGCCGGTTTGCGAGAACCTCAGCTTGTGCGCCTCGATTTGGATACTAAAATTAGTCCTGACTTGAAGGTTGTTTTTTTCACTTTGAGACAAGAAGAGAAGTATGCAGCGTTGCTCTATTTGATCAGGGAACATATTGGTTCTGATGAGCAGACACTGATTTTTGTATCCACGAAACATCATGTTGAGTTTCTCAACTTACTGTGTAGAGAAGAGGGTATTGAGGCATCTGTATGTTATGGTGACATGGACCATGATGCTCGCAAGATCCATGTATCAAGGTTTAGGGCAAGAAGGACAATGCTGTTGATTGTGACAGATGTTGCAGCTCGAGGTATTGACATTCCCTTGCTCGATAATGTTATCAATTGGGACTTTCCTCCAAAGCCTAAGATATTTGTTCATCGAGTTGGAAGGGTTGCTAGGGCTGGTCGTACTGGTACTGCTTATTCCTTTGTCACTTCAGAGGATATGGCATCCCTTTTGGATCTTCATTTGTTTCTATCTAAACCAATCAAAGCTGCTCCCACTGAAGAAGAGGTCGTCAAAAATATGGAGGGAGTCCAGTCAAAAATTGACCAGGCAATAGCTAATGGAGAAACCATTTATGGTCGTTTCCCCCAAACAGTCATCGACCTTGTTTCAGACAGAGTCAGGGAAATTATTGATACTTCTGCAGAGCTGGAATCATTGCAGAGGACCTGTACAAATGCATTTCGTTTATATTCAAAAACCAAACCCTTACCCTCAAAGGAGTCCATTAGGAGAGTAAAGGACTTACCTCGTGAAGGACTACATCCAATTTTCAAAAATGTGCTGGAAACAGGGGAGTTAATGGCGCTTGCTTTTTCCGAGCATTTGAAAAAGTTTAGGCCAAAACAGACCATATTGGAAGCTGAAGGGGAGGCGTCTAAATCAAAGCATTTACAGGGACCCAATGGCCAATGGGTTGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAAATTGGTTCAAGAGCAGCATTCTAAGAGTAATGTCGAAAAAGAAAGGGAGGATAGTGAATCAGAAATCATTCCTTCCACGGAGAAAGGGAGAAAAGCACGTGGTTCTAAGAGAAAGCCACAAACTTTCAAGGATGACGAATACTATATAAGTTCAATTCCTAAAAATTCTCACATGGAGGCCGGCCTTTCCGTTAAAGCTAGTGAAGAGTTTGGTTCAAATAGATTGGAAGCAGCTGTCCTAGATCTAGTTGCAGATGATGGTTCTGGCATGAAGAAACAAAAATCTGTGTATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAATGGCGATCGAGTTGCAGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACGAAGGCCACCAAAACGGGTATATATAAGAGGTGGAAAGAACGCTCACACAGTAAGATATCTTTTAATGGAACAAATGATGGTGATGCTCAGGGATCAACAAGTTTGTCAGGATCTTTCCGTGGAGGTAACAGGAATTTGAAAGGAGGCAGGAATAATTTTAAAGGAGGCAGGAATCAGAATTCGAATTCGCATGTACGTTCAGAAATCAAAGATATGGATCAAATCCGAAAGGAGAGGCAGCAAAAAGCAAACAGAGTTTCATATATGAAGAGCAAGTCACCAAGGGGTAAAAAATCTGGTGGCAAACATAATGGCAAAGGACGTAAAGGAGAATCCGGTGGTAAACATAGTGGGGGCAAAGGAAGAAAAGGAGGAATGGGAAGGAAGGGAAAGTAA 2436 0.4179 MGGGGERKREEKLKKQQSLAKKKSGGFESLGLNPNVFKGVRRKGYKVPTPIQRKTMPTILSGSDVVAMARTGSGKTAAFLIPMLQRLDQHLPQGGVRALILSPTRDLALQTLKFTQELGHFTDLRVSLLVGGDSMEGQFQELSQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADSLFGMGFAEQLHQILTQLGDNRQTLLFSATLPSALAEFAKAGLREPQLVRLDLDTKISPDLKVVFFTLRQEEKYAALLYLIREHIGSDEQTLIFVSTKHHVEFLNLLCREEGIEASVCYGDMDHDARKIHVSRFRARRTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRVARAGRTGTAYSFVTSEDMASLLDLHLFLSKPIKAAPTEEEVVKNMEGVQSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDTSAELESLQRTCTNAFRLYSKTKPLPSKESIRRVKDLPREGLHPIFKNVLETGELMALAFSEHLKKFRPKQTILEAEGEASKSKHLQGPNGQWVDVMKRKRAIHENIIKLVQEQHSKSNVEKEREDSESEIIPSTEKGRKARGSKRKPQTFKDDEYYISSIPKNSHMEAGLSVKASEEFGSNRLEAAVLDLVADDGSGMKKQKSVYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGIYKRWKERSHSKISFNGTNDGDAQGSTSLSGSFRGGNRNLKGGRNNFKGGRNQNSNSHVRSEIKDMDQIRKERQQKANRVSYMKSKSPRGKKSGGKHNGKGRKGESGGKHSGGKGRKGGMGRKGK* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1725 811 MobiDBLite consensus disorder prediction 556 595 - -
Lan1g1725 811 Pfam DEAD/DEAH box helicase 49 216 IPR011545 GO:0003676|GO:0005524
Lan1g1725 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 380 IPR027417 -
Lan1g1725 811 MobiDBLite consensus disorder prediction 744 765 - -
Lan1g1725 811 SMART DBP10CT_2 632 694 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Lan1g1725 811 Coils Coil 552 572 - -
Lan1g1725 811 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 12 801 - -
Lan1g1725 811 MobiDBLite consensus disorder prediction 698 811 - -
Lan1g1725 811 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 253 402 IPR001650 -
Lan1g1725 811 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 229 IPR014001 -
Lan1g1725 811 MobiDBLite consensus disorder prediction 700 721 - -
Lan1g1725 811 MobiDBLite consensus disorder prediction 1 18 - -
Lan1g1725 811 CDD DEADc_DDX54 25 230 - -
Lan1g1725 811 Pfam DBP10CT (NUC160) domain 632 693 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Lan1g1725 811 Gene3D - 242 471 IPR027417 -
Lan1g1725 811 CDD SF2_C_DEAD 251 372 - -
Lan1g1725 811 SMART helicmild6 282 363 IPR001650 -
Lan1g1725 811 MobiDBLite consensus disorder prediction 556 581 - -
Lan1g1725 811 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 53 IPR014014 GO:0003724
Lan1g1725 811 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 12 801 - -
Lan1g1725 811 MobiDBLite consensus disorder prediction 1 27 - -
Lan1g1725 811 Pfam Helicase conserved C-terminal domain 253 363 IPR001650 -
Lan1g1725 811 Gene3D - 5 232 IPR027417 -
Lan1g1725 811 SMART ultradead3 44 244 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1725 Lan-Chr1 31365363 31373671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1725 27 396 Eukaryotic Initiation Factors Gene Family AT1G72730 32.796 4.51e-59 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1725 K14808 - gmx:100806274 1236.48