Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan1g1723 | ATGGCGGGTGTATCTCTGAAATGCGGGGATTGTGGTGCTCTGTTGAAATCGGTAGAAGAAGCTCAAGAACACGCTGAGCTCACTTCTCACTCCAACTTCTCCGAATCCACTGAACCTGTTCTCAACCTCCTTTGCACCGCTTGCTCCAAACCCTGCCGATCCAAAACCGAGAGCGATTTGCATACAAAGAGAACTGGGCATACTGAGTTTATTGATAAGACTTCAGAAGCAACAAAACCAATAAGTTTAGAGGTTCCAAAGGTGGGTGCAACTGCAGAAGGCGCTGTCACTGCAACCACTAACCAAGATGAAGAAATGGTTGTTCCAGAAGTTGACAAAAAGATACTTGAGGAACTTGAATCAATGGGATTTTCTACGGCGCGAGCAACACGTGCACTTCATTATTCTGGTAATGCTGGCCTTGAAGCTTCTGTCACATGGATAGTAGAGCATGAGAATGACCCTGACATAGACCAGATGCCCTTGATACCTGCCAACACTAAAGTCGAGGCTCCTAAACCTTCTCTTACCCCAGAAGAACTGAGGGCCAAACAACAGGAACTAAGGGAGAGGGCTCGCAAAAAGAAAGAAGAGGAAGAGAAGAGGACAGAGAGAGAAAGAGAGAAGGAGAGAATTCGTATTGGCAAGGAACTGTTGGAAGCTAAGAGGATTGAAGAAGACAATGAGAGAAAACGTATATTGGCTTTGAGAAAAGCAGAGAAAGAGGAAGAGAGAAGGGCTAGAGAGAAAATCAAGCAAAAGTTGGAAGAAGATAAGGCAGAAAGAAGGCGAAAACTTGGGTTGCCTCCGGAGGAGCCTTCAGTAGCCAAACCTGCACCTGTTGTCGAGGAGAAAAAGAGTTTTCTGCCAGTAAGGCCTGCCACAAAAGCTGAGCAAATGAGAGAGTGCTTGCGTTCTCTCAAGCAGAACCACAAGGAGGATGATGCCAGAGTAAAGAGAGCATTCCAAACTCTTCTAACTTATGTGGGGAATGTTGCCAGAAACCCCGATGAGGAAAAATTTAGGAAAATTCGACTTACTAACCAATCTTTTCAGGAAAGAGTTGGTGCCTTGAAAGGGGGAATCGAATTCCTGGAAATTTGTGGGTTTGAGAAGATCGATGGTGGCGAGTTTCTGTTTTTGCCTAGGAACAAGGTTGACATTGCAGTTCTGAATTCATCTGGGTCTGAACTAGACTCTGCAATAAAGAATCCCTTTTTCGGAATTCTTTAG | 1233 | 0.4501 | MAGVSLKCGDCGALLKSVEEAQEHAELTSHSNFSESTEPVLNLLCTACSKPCRSKTESDLHTKRTGHTEFIDKTSEATKPISLEVPKVGATAEGAVTATTNQDEEMVVPEVDKKILEELESMGFSTARATRALHYSGNAGLEASVTWIVEHENDPDIDQMPLIPANTKVEAPKPSLTPEELRAKQQELRERARKKKEEEEKRTEREREKERIRIGKELLEAKRIEEDNERKRILALRKAEKEEERRAREKIKQKLEEDKAERRRKLGLPPEEPSVAKPAPVVEEKKSFLPVRPATKAEQMRECLRSLKQNHKEDDARVKRAFQTLLTYVGNVARNPDEEKFRKIRLTNQSFQERVGALKGGIEFLEICGFEKIDGGEFLFLPRNKVDIAVLNSSGSELDSAIKNPFFGIL* | 411 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan1g1723 | 410 | Coils | Coil | 181 | 213 | - | - | |
| Lan1g1723 | 410 | CDD | PUB_UBA_plant | 304 | 410 | - | - | |
| Lan1g1723 | 410 | Pfam | PUB domain | 317 | 387 | IPR018997 | - | |
| Lan1g1723 | 410 | SMART | PGNneu | 320 | 383 | - | - | |
| Lan1g1723 | 410 | MobiDBLite | consensus disorder prediction | 254 | 270 | - | - | |
| Lan1g1723 | 410 | SMART | uba_6 | 112 | 150 | IPR015940 | - | |
| Lan1g1723 | 410 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 30 | IPR013087 | - | |
| Lan1g1723 | 410 | PANTHER | F13M7.16 PROTEIN | 1 | 409 | - | - | |
| Lan1g1723 | 410 | MobiDBLite | consensus disorder prediction | 254 | 277 | - | - | |
| Lan1g1723 | 410 | SUPERFAMILY | PUG domain-like | 292 | 406 | IPR036339 | - | |
| Lan1g1723 | 410 | PANTHER | F13M7.16 PROTEIN | 1 | 409 | - | - | |
| Lan1g1723 | 410 | Pfam | UBA/TS-N domain | 113 | 148 | IPR015940 | - | |
| Lan1g1723 | 410 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 110 | 151 | IPR015940 | - | |
| Lan1g1723 | 410 | SUPERFAMILY | UBA-like | 100 | 164 | IPR009060 | GO:0005515 | |
| Lan1g1723 | 410 | MobiDBLite | consensus disorder prediction | 185 | 209 | - | - | |
| Lan1g1723 | 410 | Coils | Coil | 224 | 261 | - | - | |
| Lan1g1723 | 410 | CDD | UBA_PUB_plant | 110 | 158 | - | - | |
| Lan1g1723 | 410 | Gene3D | - | 112 | 158 | - | - | |
| Lan1g1723 | 410 | Gene3D | - | 298 | 400 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan1g1723 | Lan-Chr1 | 31349466 | 31357476 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan1g1723 | 104 | 410 | C2H2 Transcription Factor Family | AT1G04850 | 79.355 | 2.68e-151 | 429 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan1g1723 | K24348 | - | gmx:100794687 | 664.07 |