Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1713 ATGGACGGAGCGCCGCTATCTTCCTCCTCCGCCGGAACCGGCGGTGGTGGTCCTGCCCCCTTCCTTATGAAGACATACGACATGGTGGATGATTCTACCACAGACGACATCGTTTCATGGAGCGCAACGAACAATAGCTTCGTCGTTTGGAACTCTCCTGAATTCGCTCGCCTTCTTCTTCCAACCTATTTCAAGCATAACAATTTCTCCAGCTTTATTCGTCAGCTTAATACCTATGGATTCCGAAAAATACATCCTGAGCGGTGGGAGTTTGCTAATGATGATTTTCTAAAAGATCAAAAGCATCTTCTTAAGAATATTTATCGTAGGAAACCAATCCACAGTCATAGTCACCCTCCAGGTACTCCGGTGGATCCAGAAAGGGCAGCATTGGAGGAAGAAATAGAGAAACTTTCACATGAGAAAGCTTCTCTTGAATCTAATATTTTTAGCTTCAAACAACACAAGTCAACAGCAAAGGTTCAGTTGGATGATTTTCATCAGAGATTAGATGGTATAGAGAAGCGGCAAAAAAAATTGTCGAACTTCTTCGAGAAGGCTCTTCAAAATCCTGTATTTGTTGAACAGATTTCCCGCAAAATTGAGTCCATGGATTTATCAGCATATAATAAGAAAAGACGATTGCCTCAGCCAGATCACTTGTTGCCAGTTGCTAAAAGTAACTTTGTTGAAAGCTATAGCAATTTTAGAGTGGAATTAGGGAATGTTTTCCATCAAGATTTCTCCAATAAACTCAGACTGGAATTGTCACCAGCTGTTTCAGATATGAACCTGGTATCAGGTAGCACACAAAGTTCAACTGAAGATCGGGAAATCCCACAGAAAAAGTCATCTGAAGGAGAACTAAAAGGAGTGGAGACAACGAAAGCTCTTTCATTTGCACCTGAAACATTAGAGCTTGCAGATACCGGGGCTTCTTTTACTTTTAACATGGATTCATGTTTATCACGGAGAGCAGCGACTGCTGAGAGCCCAAATCTGCACTCATTAGAGCCAAGTAGTGAAGAAGGCGATAGTCATATATCCTGCCAACTAAACTTAACTCTGGCATCTAGCACATTGCAGGTAAACAGAAATTCCTACTCAGCTAGATCACCCCAAATAGACTGCCAAGAAATTGGAAAGTTGGCAGAATCAAGATTATATGGCAATGGTAAAGAATCTGATAATGGAATTTCATCTAACCGAAATCCAGTTAACGAGGTTGCCAACTTAGCTTCGCCACATGAGGCTCCAAGTAACAAACAAGTTACAGCAGCTGCTCCAGAGAGGGTAAATGATGTGTTTTGGGAACAATTCCTTACTGAAAGACCAGGCTGTTCAGACAATGAAGAGGCAGTATCCAGCTACAGAGCAAACCCATATGATGAGCAAGACGAAGGGCGGTCGGGTCATGGAATCTCTGGAAACATAAAGAGTATGGATAAGCTCACACTTTGA 1461 0.4216 MDGAPLSSSSAGTGGGGPAPFLMKTYDMVDDSTTDDIVSWSATNNSFVVWNSPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDDFLKDQKHLLKNIYRRKPIHSHSHPPGTPVDPERAALEEEIEKLSHEKASLESNIFSFKQHKSTAKVQLDDFHQRLDGIEKRQKKLSNFFEKALQNPVFVEQISRKIESMDLSAYNKKRRLPQPDHLLPVAKSNFVESYSNFRVELGNVFHQDFSNKLRLELSPAVSDMNLVSGSTQSSTEDREIPQKKSSEGELKGVETTKALSFAPETLELADTGASFTFNMDSCLSRRAATAESPNLHSLEPSSEEGDSHISCQLNLTLASSTLQVNRNSYSARSPQIDCQEIGKLAESRLYGNGKESDNGISSNRNPVNEVANLASPHEAPSNKQVTAAAPERVNDVFWEQFLTERPGCSDNEEAVSSYRANPYDEQDEGRSGHGISGNIKSMDKLTL* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1713 486 MobiDBLite consensus disorder prediction 276 290 - -
Lan1g1713 486 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 13 480 - -
Lan1g1713 486 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g1713 486 MobiDBLite consensus disorder prediction 447 486 - -
Lan1g1713 486 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g1713 486 Coils Coil 128 148 - -
Lan1g1713 486 MobiDBLite consensus disorder prediction 265 290 - -
Lan1g1713 486 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g1713 486 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g1713 486 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g1713 486 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g1713 486 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Lan1g1713 486 Gene3D - 16 111 IPR036388 -
Lan1g1713 486 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 480 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1713 Lan-Chr1 31148683 31152263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1713 21 486 HSF AT4G13980 53.291 4.81e-160 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lan1g1713 HSF_DNA-bind 1e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1713 K09419 - gmx:100816484 775.007