Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1704 AATTCCAAATCACAGCCACCAAACTGGAATGGTGAAACAAACCAAGAAATCAATGCAGGGTTGTTAGATGCATCCGGTGGCAGTGGTTGTTCCAGGTCTGAGCTACTCTATGCTTCTTCATCAAAGAGCTCAATATCAGCTTCCATTAATTCACCACCAAATAGGGATAGCAAAATGTCTATGTACATGTTTGAAAGTTCACTCGATGATTCCAGTGGTAAAAACAAACTGTCCGAAGTTGAATTTTCCCATGTGCGAGAGCTCTCTTCGGTCTCTGGTGAACCATTGCTATCTCTGAAACTTGGTAAGCGGCTGTACTTTGAGGATGTTTGCACAGCAAGTAATTCAAAGAGTCCATTGTTTTCGGGGGCTCCTATGTCATCTTTGAGTACCAGTAAAAAATGCAAGTCCAATGGTCAGAATGCACAATTTCCTCACTGTCAGGTTGAAGGTTGTGGCCTCGATCTCTCATCAGCTAAAGATTACCATTGCAAACATAGAGTTTGCGACAATCATTCCAAATCCTCCAAGGTGGTTATAGATGGTAAGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGGTCTGTCAGAGTTTGATGAGAAAAAGAGAAGTTGCAGACGACGTCTTTCTGATCACAATGTAAGGCGCCGTAAACCTCAACCTCTACCCGTCCGATTAAATCAACCAGCTTTGTCTTCATTACCCCATGATATGAGCCCATTCACTTATTCAAGGACTGCTACAAATTTAGCATGGCAACAGACACATAGAAGCAAGCTCCCCCAGACAAAAGATTTTCTCTTGAATCCTGCAAAAGCCAATAATGAGATACCAAGTATTGGCACTATGGTTTCTTATGATTTCGAAACCCCTTTTACACCGAAATGCATTGCAACGAAGAGTATTAATACAGGAATAGAAGATTTGATTACCTCCTCTGATCCTATTGTTACACAAGATTTTCACCGTGCTCTCTCTCTTCTGTCAACCAATTCCTGGGGTTCACATGAGCCGAAACCCATTCCTGTAGAACCGCCGAACAAAGCAGCCGCAACCTTGCCTGTAACACATGCTACGAGTCAGCAGCGCTTACCTCCAGAATATTGGCATATTGGTCAACAACCAGTGAATTCCAATATGTGGATCTCCTACTCAAATTGTGACGATATCAATCGCTTTCAAGAATTTCAACTGTTCAGAGAACCTTATGAGTCTGGTTTTCCTTACAACCAGTTGGATTAA 1248 0.4239 NSKSQPPNWNGETNQEINAGLLDASGGSGCSRSELLYASSSKSSISASINSPPNRDSKMSMYMFESSLDDSSGKNKLSEVEFSHVRELSSVSGEPLLSLKLGKRLYFEDVCTASNSKSPLFSGAPMSSLSTSKKCKSNGQNAQFPHCQVEGCGLDLSSAKDYHCKHRVCDNHSKSSKVVIDGKERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNVRRRKPQPLPVRLNQPALSSLPHDMSPFTYSRTATNLAWQQTHRSKLPQTKDFLLNPAKANNEIPSIGTMVSYDFETPFTPKCIATKSINTGIEDLITSSDPIVTQDFHRALSLLSTNSWGSHEPKPIPVEPPNKAAATLPVTHATSQQRLPPEYWHIGQQPVNSNMWISYSNCDDINRFQEFQLFREPYESGFPYNQLD* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1704 415 SUPERFAMILY SBT domain 145 223 IPR036893 GO:0003677|GO:0005634
Lan1g1704 415 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 3 414 - -
Lan1g1704 415 MobiDBLite consensus disorder prediction 1 25 - -
Lan1g1704 415 Pfam SBP domain 147 220 IPR004333 GO:0003677
Lan1g1704 415 MobiDBLite consensus disorder prediction 1 21 - -
Lan1g1704 415 ProSiteProfiles Zinc finger SBP-type profile. 144 221 IPR004333 GO:0003677
Lan1g1704 415 Gene3D - 137 208 IPR036893 GO:0003677|GO:0005634
Lan1g1704 415 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 3 414 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1704 Lan-Chr1 30752244 30757199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1704 33 364 SBP-box Gene Family AT5G43270 38.617 5.89e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan1g1704 SBP 1.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1704 - - gmx:100781289 424.091