Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1699 ATGGTGAAGTATTCAAGAGAGCCTGACAATCCCACCAAGTCTTGCAAGGCTAGAGGTGCTGATCTTAGAGTGCATTTTAAGAACACTAGGGAGACAGCGTTTTCCATCAGGAAGCTTCCCTTGGTGAAGGCTAAAAGGTACTTGGAGGATGTTCTTGCCCACAAACAAGCCATTCCATTCCGAAGATTCTGTCGTGGTGTTGGGAGAACAGCCCAGGCAAAGAACAGACATTCTAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAATTCATTCTTGATTTGCTCAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGGTTGGATGTCGATGCACTTTACATTTCTCACATCCAGGTCAACCAAGCACAGAGGCAAAGGCGTCGTACCTACCGTGCCCATGGAAGAATTAATCCCTACATGTCATCTCCATGCCACATTGAGCTTACACTATCCGAAAAGGAAGAACCTGTTAAGAAAGAGCCTGAGTCACAGTTGGCACCAAGCAAGAAGAAATCCCAAGCTCTTCGGAGCGGTGCTTCATCTTGA 549 0.4681 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFSIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQRQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPESQLAPSKKKSQALRSGASS* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1699 182 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lan1g1699 182 MobiDBLite consensus disorder prediction 153 167 - -
Lan1g1699 182 MobiDBLite consensus disorder prediction 153 182 - -
Lan1g1699 182 Pfam Ribosomal protein L22p/L17e 17 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lan1g1699 182 PANTHER 60S RIBOSOMAL PROTEIN L17 1 182 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lan1g1699 182 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Lan1g1699 182 Gene3D Ribosomal protein L22/L17 1 181 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lan1g1699 182 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 182 - -
Lan1g1699 182 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lan1g1699 182 MobiDBLite consensus disorder prediction 168 182 - -
Lan1g1699 182 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lan1g1699 182 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1699 Lan-Chr1 30638457 30640741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1699 1 182 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 86.264 2.36e-116 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1699 K02880 - qsu:112011643 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0032 15 204167 206551 Lan1g1699 1 30638457 30640741 PCT
Lan14g0224 14 2552481 2554024 Lan1g1699 1 30638457 30640741 PCT
Lan3g1433 3 25917239 25919722 Lan1g1699 1 30638457 30640741 PCT
Lan1g1699 1 30638457 30640741 Lan15g0032 15 204167 206551 PCT
Lan1g1699 1 30638457 30640741 Lan14g0224 14 2552481 2554024 PCT
Lan1g1699 1 30638457 30640741 Lan3g1433 3 25917239 25919722 PCT