Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1688 ATGAAGCTCTCTTCAGCTGGTTTTAGTCCTCCACCCGAGGAAGGAGAAAAGAGAGTTTTGGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTTTCTTTACCGGCTGTTGGAAGCCGTGTGGTCTACTTTCCGCAAGGTCACAGTGAACATGTTGCTGCATCAACCAACAGGGAAGTGGATGGCCATATGCCCAATTATCCAAGCTTACCTCCCCAACTTATGTGTCAACTTCATAATGTGACTATGCATGCAGATCCCGAGACTGATGAAGTATACGCACAGATGACCTTGCAACCTCTGAGTCCTGAAGAGCAAAAGGAGGCATACTTTCCAGCAGATTTAGGCACTCCGAGTAATCAGCCAACAAACTACTTTTGCAAAACTTTGACTGCCAGTGACACAAGCACTCATGGGGGGTTTTCAGTTCCTCGCCGGGCTGCTGAAAAAGTGTTTCCTCCATTGGACTTCTCCCAACAGCCTCCTTGCCAAGAGTTAATTGCAAGGGATTTGCATGGTCATGAATGGAAATTCCGACATATCTTCCGGGGCCAGCCCAAAAGGCATCTACTTACAACGGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATCTGGAATGAAAAGGGTCAATTGCTTCTTGGCATTCGGCATGCTAATCGATCACAACCTGCGATGCCTTCGTCAGTGTTGTCAAGTGATAGTATGCACTTGGGCCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGTCGTTTTACCATTTTCTACAACCCACGTGCTAGCCAATCAGAATTTGTCACACCTTTAGCAAAGTACGTTAAAGCTGTCTATCATACTCGAGTTTCAGTAGGCATGCGCTTCAGGATGCTGTTTGAGACAGAAGAATCTAGTGTGCGGCGGTACATGGGCACAATAACTGGCATTAGTGACTTGGATCCTGCTCGGTGGCCAAATTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCATAGCAGGAGAGAGGCAACCTCGAGTGTCTCTATGGGAAATTGAGCCATTAACAACGTTTCCAATGTATCCATCTCCATTCCCCCTTAGGCTTAAAAGACCATGGCCTCTAGGACTGCCGTCATACCATGGCATGAAGGATAATGATTTTGGCATGAATTCTTCGCTATTGTGGCTTCAAGGCACAACAGATAGGGGCCTTCAGTCTCTTGATTTTCAGGGAATTGGTATTAATCCGTGGATGCAACCAAGGCTTGATCCATCCATGGTGAATTTTCAAAATGATATGTACCAATCCATGGCTGCTGCTGCACTTCAGGACATGAGGACTTTAGACCCTTCCAAACAGCATCCTGCTTCTTCACTTCAATTTCAGCAACCACAGAACTTCCCCAACACGGCTCCCGTTTTAATGCAGACACAAATGTTGCAGCAGTCTCAACCTCAGCAGGTTTTTCCGAATAATCAAGAAAATCAGCATTCATCTCAAGCTCAATTTCATAACCAAGCGCATCTTCAGCAGCATCTGCAGCATCAGCACTCATTTAATAGTCATAATCATCAGCAGCAGCACCAGCAACAACGACAACAGCAGCAGCACCAGCAACAGCAACAACAGCAGCAGCACCAGCAACAGCAACAAGTGGTAGATCATCAGCAGACTTCAAGTTCTGTCTCTCAGTTTGTTTCGATACCTCAAACTCAATCATCACCGATGCAAGCTATCTCTTCACTGTGCCATCAGCAAAGTTTTTCTGGTTCAAGTGGGAACCCTGCGGCTACTGCTACTGCTTCTCGCCTGCACAATATGATGGGTTCGTTTCCCCAGGTTGAAACATCCCACCTTCTCAACCTTCCTAGAACAAGTTTTTGGATGCCTGTTCAACACTCGACTGCATGGCCACCTTCCAAGCGTGTTGCAGTCGACCCACTCCTTTCATATGGAGCATCTCTATGTCATGCAGAGCAGATAGGACAGCCACAAATAACCATGTCTGAAAATGCTGTTACATTGCCACCCTTTCCGGGTAGGGAATGCGCCGTAGAAGGGAGCACTGATCCACAAAACAATATTTTGTTTGGTGTTAATATAGATCCCTCTTCACTTCTAGTCCATAATGGGATGTCAAGTCTTAAAGGGGTCAGTGTCAATCGTGACTCATCATCCACACCTTTTCAACCTTCTAATTACCTGAATACCACGGGCACTGATTCTTCACTAAATCCTGTAATGACAAACAGCATTGATGAATCGGACTTCCTACAGACTCCAGAAAATGGGGGCCAAGGAAACTCACCAATCAAAACCTTTGTGAAGGTTTACAAGTCAGGGACCTTCGGGAGATCGTTGGATATCTCAAAATTCACCAACTACCATGAGCTGCGCAGTGAGCTTGCTCGCATGTTTGGCCTTGGAAGTGAGTTGGAGGATCCTGTAAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGATGTTCTACTCCTCGGTGATGGTCCTTGGCCGGACTTTGTAAATAGTGTATGGTGCATCAAGATACTTTCCCCGCACGAAGTGCAGCAAATGGGCAACAATGGCCTGGAGCTTCTGAACTCGGTTCCAATTCAGAGGCTCTCCAATGGCATCTGTGATGACTACACCGGCCGTGAGGACCAAAGAAACTTAAGCAATGGAATAACCACTTTAGAGTACTGA 2724 0.4655 MKLSSAGFSPPPEEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEHVAASTNREVDGHMPNYPSLPPQLMCQLHNVTMHADPETDEVYAQMTLQPLSPEEQKEAYFPADLGTPSNQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPCQELIARDLHGHEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKGQLLLGIRHANRSQPAMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASQSEFVTPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVKVGWDESIAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPLGLPSYHGMKDNDFGMNSSLLWLQGTTDRGLQSLDFQGIGINPWMQPRLDPSMVNFQNDMYQSMAAAALQDMRTLDPSKQHPASSLQFQQPQNFPNTAPVLMQTQMLQQSQPQQVFPNNQENQHSSQAQFHNQAHLQQHLQHQHSFNSHNHQQQHQQQRQQQQHQQQQQQQQHQQQQQVVDHQQTSSSVSQFVSIPQTQSSPMQAISSLCHQQSFSGSSGNPAATATASRLHNMMGSFPQVETSHLLNLPRTSFWMPVQHSTAWPPSKRVAVDPLLSYGASLCHAEQIGQPQITMSENAVTLPPFPGRECAVEGSTDPQNNILFGVNIDPSSLLVHNGMSSLKGVSVNRDSSSTPFQPSNYLNTTGTDSSLNPVMTNSIDESDFLQTPENGGQGNSPIKTFVKVYKSGTFGRSLDISKFTNYHELRSELARMFGLGSELEDPVRSGWQLVFVDRENDVLLLGDGPWPDFVNSVWCIKILSPHEVQQMGNNGLELLNSVPIQRLSNGICDDYTGREDQRNLSNGITTLEY* 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1688 907 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Lan1g1688 907 Gene3D - 125 228 IPR015300 -
Lan1g1688 907 MobiDBLite consensus disorder prediction 453 473 - -
Lan1g1688 907 PANTHER AUXIN RESPONSE FACTOR 1 889 - -
Lan1g1688 907 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Lan1g1688 907 Pfam AUX/IAA family 771 862 IPR033389 -
Lan1g1688 907 CDD B3_DNA 126 226 IPR003340 GO:0003677
Lan1g1688 907 SMART B3_2 127 229 IPR003340 GO:0003677
Lan1g1688 907 Coils Coil 528 550 - -
Lan1g1688 907 MobiDBLite consensus disorder prediction 455 473 - -
Lan1g1688 907 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Lan1g1688 907 MobiDBLite consensus disorder prediction 727 754 - -
Lan1g1688 907 MobiDBLite consensus disorder prediction 485 576 - -
Lan1g1688 907 Gene3D - 773 866 - -
Lan1g1688 907 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan1g1688 907 Gene3D - 291 363 - -
Lan1g1688 907 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 889 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan1g1688 907 ProSiteProfiles PB1 domain profile. 777 861 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1688 Lan-Chr1 30397669 30405127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1688 1 484 B3 DNA Binding Superfamily AT1G30330 82.413 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan1g1688 AUX_IAA 2.4e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1688 - - gmx:100777789 1420.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0197 14 2366523 2372495 Lan1g1688 1 30397669 30405127 PCT