Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1650 ATGGTAGCTCAACAATCACAACCTCAGATTCAGTCTCCTACACCTTCTACACAAGATGATGCTTTGAAGAGAAACACCGATTGTGTGTACTTTCTTGCATCTCCTCTAACATGCAAAAAGGGAAATGAATGTGAGTACCGCCATAGTGAATATGCTCGGGTTAATCCTAGAGATTGCTGGTATTGGTTGAATGGCAATTGCTTGAATCCCAAATGCTCATTCCGTCACCCACCTCTTGATGGCCTGTTAGGAACACCGCCAGCCACTGCTTCTGCGCCATCTTTGCCATCTATTCCACTGTTACAGCATACAACACTGTCTGCAACACATGCACCATATAATTCTAGCAAACCAGCTGTTCCTTGCATTTTCTTCCATAAAGGGCTTTGCTTAAAAGGTGACAGATGTGCTTTCTTGCATGGACCACTTCCTAATAATGGTAATAAAGTAGTTACCCAGGACCGAATGAATAGCCAAGGAACTGAGATTCAGAGTTTTAAGAAGTCATTTGGAGGAATTGAACAGAATACACAGGAAAGGAAAATTTCCCAAGGGATTGTTGTGAAGCCAGTTGGAGATCTTGAAGCTAAACCTGCACAAAAAGGTGAAACTGCTCCACAAAGGAATTTTTTTGAGTTGAAGAAGAATGTGCCACCAACATCTGCAGGATTTGAGGATGAGGCTTCTAGATTCAAGATAACAAGTACTCCTTCAGTGATCAATGAGTCCACTGTAGTTCGGTCTAGTCATCTGCATCAAGCTTATGTGCCAGATGATCGTAGCTTCCACAATGGTAAGGACAATGATGAGTTTCTTAGAGAAACCTCTCCTGGGTTTGATGTTCTTGTTGCTGATGAACTTAGGAATTCTGATTATTATCATGGGGATGATGAATTTGGCAACGCAAGAGGTCAAGATGATCTAGGACATTCTTCTGACTATAGTTTAGCAGCTGATATTGGCCGAGATAGATTTCATGTGCCAGAGACAAATATGTGGGAGCAGCATACAAAGCCACCAGCCCATTTGGAAAAAAGGACTCATCACAGATCTGACAGTCCTAACAATGCTGAGGTCTCAGATCTCCGAATTCATTTATCCAAGCGCAGGAAGGGTAATGGTTTGAAATCTGTTGTCACACATGATTATGCTGTTGAAAGCCATGGTGAGGAACATAGTTACCGAAACTTCTCTAGGAAGGATTCACTCCAGTTACCTTTGAATGCGAGCTCCCTCAGTAATCGCTTTCGAGGAAGAATAAAACTCCCAATAAATGGTGGTGATGGTCACCCAGAGAGGGAATCAGACAGAGGAAGAATTAGGAGCAGATTGTCATCTGGAAGGTTACCAGCCCCTCATCAAGGATGGCTTCAAGATAGAATTATAGGAAGGGTGCAAGATGGCGAGAGGAGAAACTTGAGGGATCGACCGGTCGGGAGAGAACTATTGGGGGACAGAACCAATGAATTTTATGCCCCAAAACGTCTTTCTGAACTTAAAAATGAGAGCAGTGAGAATAGGGAGCAGCGATTTCTGGGAAAGAGAAAAAGTTTAAGGGATCAACAATCTGATGATGATTTTCAGTTTGAAGGTCCAAAACCTCTTAGTGAAATTCTGAAGGAGAAGAAGAGAGGAGTTGGAGCTGGTGCAGCCTCCCAGAGTGGTAGCTCATCTGAGAATAAGAATAGAGAAATTACCCACAACTCAGATCACACATCTCTCACAAATACACAGAACGGAGCATTGTCTGAGACCATGGAGAATGTCAAGAACCGTGAAGAAGGATCCAAGTCTCATGTTACTGATGCAGTTGGAAAAAATGTAGATAATATTGATGCAACTCATGGTCAATCATCCGAGGAAGGACTGATCTATGATGAAGCAGCGGAAGATCAGGAATACGAAGGTGGTGATCAGAGGGACGATGTGGAATATGATTATGATCAAGTTGATGAGGGGGACTACGAGTATGAACAAATTGAGGAGGGTGAAAATCTAGAGCAAGAATACATGGATGAAGAAGAAGATGGGGATGACTTTGCTAAGAAGATTGGTGTCATACTTACATAA 2070 0.4261 MVAQQSQPQIQSPTPSTQDDALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDGLLGTPPATASAPSLPSIPLLQHTTLSATHAPYNSSKPAVPCIFFHKGLCLKGDRCAFLHGPLPNNGNKVVTQDRMNSQGTEIQSFKKSFGGIEQNTQERKISQGIVVKPVGDLEAKPAQKGETAPQRNFFELKKNVPPTSAGFEDEASRFKITSTPSVINESTVVRSSHLHQAYVPDDRSFHNGKDNDEFLRETSPGFDVLVADELRNSDYYHGDDEFGNARGQDDLGHSSDYSLAADIGRDRFHVPETNMWEQHTKPPAHLEKRTHHRSDSPNNAEVSDLRIHLSKRRKGNGLKSVVTHDYAVESHGEEHSYRNFSRKDSLQLPLNASSLSNRFRGRIKLPINGGDGHPERESDRGRIRSRLSSGRLPAPHQGWLQDRIIGRVQDGERRNLRDRPVGRELLGDRTNEFYAPKRLSELKNESSENREQRFLGKRKSLRDQQSDDDFQFEGPKPLSEILKEKKRGVGAGAASQSGSSSENKNREITHNSDHTSLTNTQNGALSETMENVKNREEGSKSHVTDAVGKNVDNIDATHGQSSEEGLIYDEAAEDQEYEGGDQRDDVEYDYDQVDEGDYEYEQIEEGENLEQEYMDEEEDGDDFAKKIGVILT* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1650 689 SMART c3hfinal6 23 50 IPR000571 GO:0046872
Lan1g1650 689 SMART c3hfinal6 55 78 IPR000571 GO:0046872
Lan1g1650 689 SMART c3hfinal6 117 142 IPR000571 GO:0046872
Lan1g1650 689 ProSiteProfiles Zinc finger C3H1-type profile. 53 79 IPR000571 GO:0046872
Lan1g1650 689 Pfam Zinc-finger containing family 23 77 IPR041686 -
Lan1g1650 689 MobiDBLite consensus disorder prediction 569 586 - -
Lan1g1650 689 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 5 687 - -
Lan1g1650 689 ProSiteProfiles Zinc finger C3H1-type profile. 22 51 IPR000571 GO:0046872
Lan1g1650 689 MobiDBLite consensus disorder prediction 499 644 - -
Lan1g1650 689 ProSiteProfiles Zinc finger C3H1-type profile. 116 143 IPR000571 GO:0046872
Lan1g1650 689 Pfam RNA-binding, Nab2-type zinc finger 121 141 - -
Lan1g1650 689 MobiDBLite consensus disorder prediction 624 644 - -
Lan1g1650 689 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 5 687 - -
Lan1g1650 689 MobiDBLite consensus disorder prediction 499 544 - -
Lan1g1650 689 MobiDBLite consensus disorder prediction 1 21 - -
Lan1g1650 689 MobiDBLite consensus disorder prediction 332 360 - -
Lan1g1650 689 MobiDBLite consensus disorder prediction 338 360 - -
Lan1g1650 689 SUPERFAMILY CCCH zinc finger 121 152 IPR036855 GO:0046872
Lan1g1650 689 MobiDBLite consensus disorder prediction 420 439 - -
Lan1g1650 689 Gene3D - 14 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1650 Lan-Chr1 28645146 28648653 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan1g1650 zf-CCCH_3 6.5e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1650 - - lang:109359705 1323.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0377 12 8946939 8950286 Lan1g1650 1 28645146 28648653 LSH
Lan1g1650 1 28645146 28648653 Lan1g0825 1 19022411 19025999 LSH