Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1647 ATGGCATCATACCAAGTTGAAATCCCTTCTCCTTCACCATTTGGTTGTGTTTTGAGAGACCATACAAGATTCCAAAATAACATGAAGAACTTTGTGAGAGACCATATTAACACATGCAACATTTCTATCTCTTCTGATCCTGCACCAATAAACAAGGACTCACAAAACCCAATTAAAAATGGTACTTGGGCCTCAAGAGTTGTGAAAAACAACATTGGAAGTCTTAGTTTTGCAAGAAGATCAAATCACAACATGTACAATGAACAAGATGATTCTTCATCATTGTCTGCACTTGTTAGCCCGAGGCACTCGAAAACGATTAATCGATGGGCTGCGAAACAAGCTCGAGAAATGGTGTCATCGACACTTGAGAATGAGGGTGATGTGTTGGAGAATCCCTCTAAAAGTGACATCTCAAACCTTGGAGCATCTTCCCTTGTTCAAATATGGGAAAAGAGGCTTAACAAATTCAATTGCACCAAACCAAATGCACCACTACCCTCCCTTCTAAGAACAACTAGTCCTAATGAGAATGCGCTTTCTGTGGAACAACAACAATGCATGGTTTCAGGACAAAGAGAAATCATTGATGAACCACAAGGTAATAGTGAGGTATCATTCCAAGATTACGAATCTGATAAATCTTGTTCACCAAAAGCTCATAGTAGTTCAGATGGTGCAGAAAGTGAGAGGGGAAAGGTTGCAGATATCATTAAGAGACTCACTGCAACAAAGAAAATGCAAAGTGCAGTGTCAATGAATGATGATAATGATAATGAGGTGTGTAGTAATGTGACAGGATCTTCGCATAGAGAGCGCAACTGCGCTTCTACACCAGAACAACCGGAGTACAGAGCTTTTGCTCAAGTCTCAAGTAACCCACGGATTAGGGGGCGGCATGCATTTAACAATTTGCTTATGCAATTTGAGAGTGAAAAGCATGGAGAGTTACACAATCTTGCTGAGCGTGGCGCAGTTTCAAAATTCACACAAAGGGGTCGTATTCAATCATTGCTTCGACTTCGATTATTACAACGTGGGGTTGCAGCTAATGATCAATGCAGCCAGAAATCAGCAGCATCTGAAGTGAATAGACAGCCACAAGGATCAATAATGCATCTAAGGGAAAGATTTAGCTGCATAGGGGTTGAAGAAAGAAATTTTGCCCTGGTAGAAGCATCCAATCCAAGAAGTCCTTGCAGGGACCGGGAGATAGTAAGTAACATCACACAATTGGATAATATTCCCACCGAAAACCAACTGGGAAAATACACTCATCACAGGACTTTTGATGCCAATGACGAAGAAAAAGCTCATCTAAGTTCAGATGTCACATTCCAAGGAACTTGCTATGAAGCTCAAAATGATGATCTAAAAGAAATCATCGGAACATCTTGTTTTGTGGCTAGTTCAAGTGACCAACATTATACAACGGCCGAAACCAATTATGATGAGAAGGAAGAGGAAGCAGAAAGTCACCAGCAGTATGATGCTAGCAGCTACAATGAGATAGAAGAAGACGAAGAGAGCATCGACCAGAATTATGATGATACTGGAGCCAGTTATGATTGGATCAGTCCAATTTCTCGGCCTAGGAGCTATTGGGAAGAACGCAGGCAAGAATGGTATCGAGAGATACTTCACTTTGGTGCAGACAATGATGAGAGACGTACGCTCCTCGAAAGGAGAACAGTATCAACTTTCCTTTCTAGCGATTTCCGGGAAAGGATGGATAGCTTGATGATGTCTCATGCAGGGAATCAAACACATCTAGTTAGTAGTCAACATGCCGAGGAAGATAATCAAGAGAGTATGGATCAATTGATCATGTTTTTTCAAGAACGCTTGCATACTCGAAGCAATCCTCAAGAAGATGGAGTACACGGAGCAGAAGAGGAAGAAGAGAGGATATATGAGGAAGAAGTAGAGAAGGCAGAAGAGAGCATCACAAGTAGTTCAGATAATGAACTCAGTGATTATTGCAATCAATCCTCATCATCAATGCATACACATTCTTCCACAACATGGAGTTACAGAGACAATGAAGTTGATAATGATTGTGATAAAGCATCTGTTTCATCACCACCACCTTCCCAATCTCAATCTTTCTATCATGATAGTCAACAATACTCTTCTGCCACCAATCATCATTCAATTGAAATGGAATTCATATACGATTTGCGAAGGCAGATGGATCAACTTTTTCATGAGGTATCTGAGCTAAGGAAATCAGTACAAAGTTGCATGGATATGCAGATGCATTTGCAACAATCTCAGAACCAAGAAGTTCATACAGTTAAAGAAGAAGAAAACAAGTTCCATTGCAAGGCACCAAAAAAGGGCAACTGTTGCATTTGCTATGAGGAGAGAGTCAACTCACTTTTCTATAGGTGTGGGCACATGTGTGCGTGTCTCAAGTGTGCGAATGAGTTGCAATGGAACAGTGGAAAATGTCCAGTTTGTCGAGCTCCAATAGTAGATGTTGTACAAGTATATGCTCCATTAGGGTCAAGCTTAGAGGACTAA 2526 0.4086 MASYQVEIPSPSPFGCVLRDHTRFQNNMKNFVRDHINTCNISISSDPAPINKDSQNPIKNGTWASRVVKNNIGSLSFARRSNHNMYNEQDDSSSLSALVSPRHSKTINRWAAKQAREMVSSTLENEGDVLENPSKSDISNLGASSLVQIWEKRLNKFNCTKPNAPLPSLLRTTSPNENALSVEQQQCMVSGQREIIDEPQGNSEVSFQDYESDKSCSPKAHSSSDGAESERGKVADIIKRLTATKKMQSAVSMNDDNDNEVCSNVTGSSHRERNCASTPEQPEYRAFAQVSSNPRIRGRHAFNNLLMQFESEKHGELHNLAERGAVSKFTQRGRIQSLLRLRLLQRGVAANDQCSQKSAASEVNRQPQGSIMHLRERFSCIGVEERNFALVEASNPRSPCRDREIVSNITQLDNIPTENQLGKYTHHRTFDANDEEKAHLSSDVTFQGTCYEAQNDDLKEIIGTSCFVASSSDQHYTTAETNYDEKEEEAESHQQYDASSYNEIEEDEESIDQNYDDTGASYDWISPISRPRSYWEERRQEWYREILHFGADNDERRTLLERRTVSTFLSSDFRERMDSLMMSHAGNQTHLVSSQHAEEDNQESMDQLIMFFQERLHTRSNPQEDGVHGAEEEEERIYEEEVEKAEESITSSSDNELSDYCNQSSSSMHTHSSTTWSYRDNEVDNDCDKASVSSPPPSQSQSFYHDSQQYSSATNHHSIEMEFIYDLRRQMDQLFHEVSELRKSVQSCMDMQMHLQQSQNQEVHTVKEEENKFHCKAPKKGNCCICYEERVNSLFYRCGHMCACLKCANELQWNSGKCPVCRAPIVDVVQVYAPLGSSLED* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1647 841 Coils Coil 628 648 - -
Lan1g1647 841 MobiDBLite consensus disorder prediction 249 275 - -
Lan1g1647 841 MobiDBLite consensus disorder prediction 478 504 - -
Lan1g1647 841 MobiDBLite consensus disorder prediction 214 233 - -
Lan1g1647 841 Coils Coil 476 496 - -
Lan1g1647 841 MobiDBLite consensus disorder prediction 691 711 - -
Lan1g1647 841 PANTHER BNAC05G24000D PROTEIN 1 833 - -
Lan1g1647 841 SUPERFAMILY RING/U-box 782 828 - -
Lan1g1647 841 MobiDBLite consensus disorder prediction 618 633 - -
Lan1g1647 841 MobiDBLite consensus disorder prediction 479 494 - -
Lan1g1647 841 MobiDBLite consensus disorder prediction 249 279 - -
Lan1g1647 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 760 839 IPR013083 -
Lan1g1647 841 CDD mRING-HC-C3HC5_NEU1 782 822 - -
Lan1g1647 841 MobiDBLite consensus disorder prediction 198 233 - -
Lan1g1647 841 PANTHER BNAC05G24000D PROTEIN 1 833 - -
Lan1g1647 841 MobiDBLite consensus disorder prediction 198 213 - -
Lan1g1647 841 MobiDBLite consensus disorder prediction 651 680 - -
Lan1g1647 841 MobiDBLite consensus disorder prediction 617 711 - -
Lan1g1647 841 Pfam Zinc finger, C3HC4 type (RING finger) 780 827 - -
Lan1g1647 841 ProSiteProfiles Zinc finger RING-type profile. 783 822 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1647 Lan-Chr1 28516254 28521184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1647 783 831 C3H Transcription Factor Family AT3G06140 40.816 1.44e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1647 - - aprc:113855868 783.097