Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1644 ATGGCTATTTCACCTCATATGTTCACAACCCAAAGACGACGACCCTCCTCTGAGTCGTTTATCCCTCCAAAATTCACAGACATCAACCTCCTCCACTCTCTTCTCCACATCACAAACCAAATTTCTTCATTCAACCCAACCAACCTGTTACTCCTTAAACGCAGTTCTTCTTCTGTCGTTCATAAAGCAAAGCTTCTCAATGTTCTCTTCAAAGACTTGGTTAGAAATTCTATTCCTCTCTGTTCCAATTCCTTAATCCTCTGCTTCGAAGAAATGTACATCGTGCTACACCAGATCAAAACCCTCATCGAAGATTGTATAAAAGGGAGCAAATTCTCTCTCCTCATGCAAGTTGAAACCGTCGCTGACACTTTCCACATACTCACAAGAGAACTTTCAACGCTTCTTGATATTTTTCCGGTTCAAGAGCTGGACCTAAACCACGACCTGTTCGAACTTGTAATCCTTATTAGAAAACAGTGCTACGAATCGAAGATCGTAGTAGGAAAAGAGGAGAGGGAGCTACGAAACGACGTCGTTTTGGTGATTGAGCGGATCAAGAACGAGATCGTTCCTGATAAATCCAACCTTGCTGAGATCTTTTCAAGGTTGGAGATTCGAGATTCTTCAAGTTGCAGAGCGGAGATTGAAGCATTGGAGGAAGAGATTCAGAATTGGATCGATGAGCAATCGAAATCGGAGATCGTGGCGTTGATCGGTCTCGTTCGTTATACGAAATGCGTCCTCTTCGGAGCATCAACGCCTTCTCCGTCGAAAGAGATTCAGCGGCGGAAACAACCGTCAGAGGTGGTTGTTCCGGCGGATTACAGGTGTCCGATAAGTTTAGAGTTAATGCAAGACCCGGTTGTCGTGGCAACAGGACAAACGTACGATCGAGATTCCATTAAGCTCTGGATGGATTCTGGACATAACACGTGTCCAAAAACAGGTCAAAAACTGACCCACACAGAACTCATACCAAATCTTGCACTGAGGAACATGATAGCTATATGGTGTCGCGAACAGAAGATCCCATTCGAAGTAGAATACGTTAACGGAAAACTCAACTGTCGTTTAACCAACAAAGCAGCGTTGAAAGCTACAAAAATGACGGCGTTATTTTTAGTTGATAAGCTCAAGTATCATGAAGACGTTTCTGATTCGAGTAATGAAGACTTAAACGGTGTCGTTTACGAGCTTCGGGTTTTAGCAAAGACAGATTCTGATAGCAGAGCCTGTATTGTCGAATCAGGTGCAATTCCACTTTTGGTTCGGTACCTTAGCATCGACGTTGGGTTGCACAACCCGAGCCTCCAGGTTAATGTTGTAACCACAATCCTAAACTTGTCAATTTTGGAAGCAAATAAAACAAGGATAATGGAAACTGAAGGAGCATTAAACGGTGTCGTTGAGGTGTTGCAATTTGGTGCCACGTGGGAGGCAAAGGCAAATGCAGCTGCAACATTGTTTAGTTTAACAGGTGTGGCAGCATATAGAAAAAGGCTAGGGAGGAAGACACGTGTGGTTAGCGGGTTGATCCAACTAGCTAGGTGTGGGCCCGTGGGTGCAAGAAGGGATGCGTTGGCAGCGATATTGCACATGGCTGCGGATAGAGAAACTGTTGGGAAGTTGGTGGAGGGTGGCGCGGTGGAGATGGCAGTGGAGGTTATGGCGGCGCTGCAGGAGGAGGCGGTGGCTATCCTTGAGGCGATGGTGAAGCGTGGTGGGTTGGTGGCAGTGGCTGTAGCTTATGCGGGGATTAAGAAATTGGGGGTTGCGTTGAGGGAGGGTTCTGAGAGGGCTAGGGAGAGTGCAGCTGCGACACTTGTAACGATGTGTCGGAAAGGTGGGTCGGAGATTGTGGCAGAGCTGGCGGCGATTCCGGGGGTTGAGAGAGTGATATGGGAGTTGATGGCGGTTGGGAGCATGAGAGGGAGAAGGAAAGCCGCCACTTTGTTGAGAATTTTGCGGCGGTGGGCGGCGGGTTTGAATGGCGTAGAGAGTGAAGGATTCACAACAACCCTTACTTCTTCATCAATTGTGGTCGTACCAACTTCCAATTTAGTTGCATAA 2073 0.4689 MAISPHMFTTQRRRPSSESFIPPKFTDINLLHSLLHITNQISSFNPTNLLLLKRSSSSVVHKAKLLNVLFKDLVRNSIPLCSNSLILCFEEMYIVLHQIKTLIEDCIKGSKFSLLMQVETVADTFHILTRELSTLLDIFPVQELDLNHDLFELVILIRKQCYESKIVVGKEERELRNDVVLVIERIKNEIVPDKSNLAEIFSRLEIRDSSSCRAEIEALEEEIQNWIDEQSKSEIVALIGLVRYTKCVLFGASTPSPSKEIQRRKQPSEVVVPADYRCPISLELMQDPVVVATGQTYDRDSIKLWMDSGHNTCPKTGQKLTHTELIPNLALRNMIAIWCREQKIPFEVEYVNGKLNCRLTNKAALKATKMTALFLVDKLKYHEDVSDSSNEDLNGVVYELRVLAKTDSDSRACIVESGAIPLLVRYLSIDVGLHNPSLQVNVVTTILNLSILEANKTRIMETEGALNGVVEVLQFGATWEAKANAAATLFSLTGVAAYRKRLGRKTRVVSGLIQLARCGPVGARRDALAAILHMAADRETVGKLVEGGAVEMAVEVMAALQEEAVAILEAMVKRGGLVAVAVAYAGIKKLGVALREGSERARESAAATLVTMCRKGGSEIVAELAAIPGVERVIWELMAVGSMRGRRKAATLLRILRRWAAGLNGVESEGFTTTLTSSSIVVVPTSNLVA* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1644 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 348 IPR013083 -
Lan1g1644 690 PANTHER U BOX DOMAIN-CONTAINING 12 671 - -
Lan1g1644 690 Coils Coil 209 236 - -
Lan1g1644 690 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Lan1g1644 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 464 IPR000225 GO:0005515
Lan1g1644 690 Pfam U-box domain 272 343 IPR003613 GO:0004842|GO:0016567
Lan1g1644 690 Gene3D - 380 654 IPR011989 -
Lan1g1644 690 CDD RING-Ubox_PUB 276 318 IPR045210 -
Lan1g1644 690 SMART arm_5 407 451 IPR000225 GO:0005515
Lan1g1644 690 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Lan1g1644 690 SUPERFAMILY ARM repeat 387 656 IPR016024 -
Lan1g1644 690 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 12 671 - -
Lan1g1644 690 SUPERFAMILY RING/U-box 269 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1644 Lan-Chr1 28209171 28211468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1644 11 689 U-box Gene Family AT5G01830 54.810 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1644 - - cam:101506886 905.205