Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1642 ATGGCTTTGATTGTGGATCAACAATCAAACTTCAAGTACTTTTGTAAAATTTGCAAGAAAGGTTTTGGTTGTGGAAGAGCCCTAGGAGGACACATGAGGGCACATGGCATAGGGGATGAAACAGGCCAAATCGACGACGATGACCCGGAAGCGGATTGGGAAGAGAGGTTTGGTGGCAATGTGCCACCAAGCAATAAACGTATGTATGCCCTAAGAACAAACCCGAATAGGTTAAAAAGTTGTAGGGCATGTGAGAATTGTGGCAAAGAGTTTTTGTCATGGAAATCATTCCTTGAACATGGAAAGTGTACCTCTGAAGAAGCTGAGTCTCTAGTCTCATCTCCTGCTTCTGAAGCTGACGATGATGGTGTTGGAAGAAGAGGTTGTGGTTGGTCTAAAAGGAAAAGATCATTCAGAGCCAAAGTTGGTGATTGCTTTAATAAATATAATTGTCCTTCAAGCGAAGAAGAAGATCTAGCCAATTGTTTGATGATGTTGTCCAATGCCATTGTTGATTCTCCTTTAGCTGAGCCTGAAGAGTCTTGTGCCTCAGGAAGTAAAGATGAGGAAAGAAGAAATCCCATGAACTTCATTGCACCATTGTCATGCAGAGTTAATCTTGTTGATAATAAGGCTAAAGGGGTTGCAAAAGGGTTGTTTGAATGTAAAGCATGCAAGAAAGTTTTCAATTCTCATCAAGCATTGGGTGGCCATAGAGCTAGCCACAAAAAAGTTAAGGGATGTTTTGCTGCAAGACTTGATAATAACATTGATGATAATCTACCTGAGGATGATGTCATAATACATGAAGAGTTTTTTCCTACAAAATCAAACTCAAGTCTTCAATTCGATCATGGTTCCACATTAGCCTCTTCCTCTAAGAGAAAATCCAAAGTTCATGAATGTTCCATTTGTCATAGGAGTTTCTCTTCAGGACAAGCATTGGGGGGACATAAAAGGTGCCATTGGATCACATCATCAAATGCACCTGATACTTCTACATTGGCAAGATTTGAACAATTTCAGGACCACATGGAACAAATACAAAAGTTTGATAACTCTTCTGACCCACTTGAACTCAAACTTGACCTAAACCTTCCTGCTCCTGCCAATGACCTTACCAGAAAGAACTTGTCCACAGAAATTTTCTTGCTGCCATGGGTTGGAACAAATGACAATAATAATAATTATAATAATAATAATAATAATAATAATAATAATAATAGTCAATGTCAGAGTCACCACCAACACAACCAAATTGTCAATGACAACAACAATGAGGACAAAAATAATAACACCAGTAATGTTTTGTTGCAAAGTGATGTGGATAATGAAGCTGATAGTAAGGCCAAGTTAGAAAAACTAAGTGAGCTAAAGGACATGAACAATGGTGGAAGTTCTTCACCATGGTTGCAGGTGGGAATTGGCTCCACAAATGATGTGGGAACAGAGAAATGA 1458 0.3896 MALIVDQQSNFKYFCKICKKGFGCGRALGGHMRAHGIGDETGQIDDDDPEADWEERFGGNVPPSNKRMYALRTNPNRLKSCRACENCGKEFLSWKSFLEHGKCTSEEAESLVSSPASEADDDGVGRRGCGWSKRKRSFRAKVGDCFNKYNCPSSEEEDLANCLMMLSNAIVDSPLAEPEESCASGSKDEERRNPMNFIAPLSCRVNLVDNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNNIDDNLPEDDVIIHEEFFPTKSNSSLQFDHGSTLASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSSNAPDTSTLARFEQFQDHMEQIQKFDNSSDPLELKLDLNLPAPANDLTRKNLSTEIFLLPWVGTNDNNNNYNNNNNNNNNNNSQCQSHHQHNQIVNDNNNEDKNNNTSNVLLQSDVDNEADSKAKLEKLSELKDMNNGGSSSPWLQVGIGSTNDVGTEK* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1642 485 MobiDBLite consensus disorder prediction 394 442 - -
Lan1g1642 485 PANTHER OS02G0659100 PROTEIN 1 483 - -
Lan1g1642 485 PANTHER OS02G0659100 PROTEIN 1 483 - -
Lan1g1642 485 SMART c2h2final6 13 35 IPR013087 -
Lan1g1642 485 SMART c2h2final6 220 242 IPR013087 -
Lan1g1642 485 SMART c2h2final6 300 322 IPR013087 -
Lan1g1642 485 MobiDBLite consensus disorder prediction 460 485 - -
Lan1g1642 485 ProSitePatterns Zinc finger C2H2 type domain signature. 302 322 IPR013087 -
Lan1g1642 485 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Lan1g1642 485 SUPERFAMILY beta-beta-alpha zinc fingers 219 322 IPR036236 -
Lan1g1642 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 247 IPR013087 -
Lan1g1642 485 MobiDBLite consensus disorder prediction 394 485 - -
Lan1g1642 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 322 IPR013087 -
Lan1g1642 485 Pfam C2H2-type zinc finger 220 244 - -
Lan1g1642 485 Pfam C2H2-type zinc finger 13 35 - -
Lan1g1642 485 Pfam C2H2-type zinc finger 299 324 - -
Lan1g1642 485 ProSitePatterns Zinc finger C2H2 type domain signature. 222 242 IPR013087 -
Lan1g1642 485 Gene3D Classic Zinc Finger 10 103 - -
Lan1g1642 485 Gene3D Classic Zinc Finger 218 322 - -
Lan1g1642 485 SUPERFAMILY beta-beta-alpha zinc fingers 11 36 IPR036236 -
Lan1g1642 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 35 IPR013087 -
Lan1g1642 485 MobiDBLite consensus disorder prediction 444 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1642 Lan-Chr1 28142704 28144439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1642 118 366 C2H2 Transcription Factor Family AT1G02040 36.759 2.09e-33 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan1g1642 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1642 - - gmx:100793846 732.635