Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1638 ATGGAAACTTCACAAACGGAAGAGCTTTTGAAGAAGATCCAACAGCTAGAAGAAGGACACGCTCATCTGAAGCAAGAAATGTCAAAACTGAAGCTCTCAGGTGGTGGTGGTGATGGTGGTGGTGATGTAAGAGCACATCGGCAAAGGTCTCACTCGGTGTCGCCGCAGCGGTTCAGGTTAGGGAGGAGAACCGATGCAGCGGCGGCGGCAGCAGCGTGGAATAAAGGGTCTTGTTCGTTTAAACAATCGTCACCGTTGCAAAGAGAGAGTCGTAGTGGTAGTGAACCTCAAAATGACGGTGGTGATGGTGGTGGTGGTGGTGCGTCGTGTGGGCCCTCGGCTGTGAATTTTAGTGATAAACAGTATCTTAATATTTTGCAATCAATGGGACAGAGTGTTCATATATTGGATCTTAACTCTCGTATTATATATTGGAACCGTAGTGCTGAAAAGCTATATGGTTATGCAGCAGAGGAAGTTCTTGGCCAGGAAGGGATTGAGCTGATTGTAGACCCAAGTGATTTTGCCTTAGCCAATGATGTAGTGAACCGTGTCACAATGGGAGAGAGCTGGACTGGGCAATTCCCCGTCAAGAATAAAATGGGAGAGAAATTTTTGGTTGTAGCAACCAATACACCTTTCTATGATGATGATGGAAGCTTAGTTGGCCTCATTTGTGTCTCAAGTGATTCACGTCCCTTTCTTGAAATGAGAGTTCCATTCTCAGGCGTAAAGAATGCCGGATCCAGTGCAGGTTCCAACCGTCCTAGAAGTAGCATCACCAATAAACTTGGCCTTGACAGTCAACAGCCACTTCAAGTTGCTCTAGCATCCAAAATTTCTAATTTGGCGTCAAAGGTGAGTAACAAAGTTAAGTCAAGAATCAGGACAGGAGAGAATAACATGGACCATGAAGGTGTGGGTGGAGAAAGTCAAAATTCCGAGCATAGTTTCTCAGAATCTGACCAGAGAGAGGATGCTAATTCCAGTGGAGCTAGTACACCTAGAGGTGATGCGGCACTGTCCCCATTTGGTCTGTTTTCTCATGTTGAAGAGAAATCCCTAGGAAAAACTTCAAGAGACTCTGGTGATGAGAGTGAAGGAAAGCCTATTCATAGAATCATAACTTCAAAGGCTGAAGCATGGATTCAAAAGAAAACACTATCGTGGCCGTGGAGAGCAAATGATCGAGAAGGATCAGAGGCAAAGAATCTTTCTTCGGGCGTGAAGCAAGAAAGCCAGGCAGGTCCTATTAACAACGAGGCTTCCGGATCCTGGTCCTCCCCCCTTAATGTTAACAGCACAAGTAGTGCCAGCAGCTGTGGGAGTGCTGGCAGTTGTGCTGTCAGCAATAAAGTGGATGTGGACACTGATTGCTTGGATTACGAAATTTTGTGGGAGGACCTGACAATTGGAGAGCAAATTGGGCAAGGTTCATGTGGAACTGTATATCATGCTCTGTGGTATGGATCAGATGTTGCAGTCAAGGTATTTTCAAAGCAAGAATATTCTGATGATGTGATAATGTCCTTCAGACAAGAGGTTTCTGTCATGAAAAGACTTAGACACCCAAATATTCTTCTCTTTATGGGGGCAGTGACTTCACCTCAACGCCTCTGCATTGTGACAGAGTTTCTCCCACGTGGAAGCTTGTGCCGCTTGTTACACAGAAATACATCCAAACTTGACTGGAGACGTCGAGCTCACATGGCCTTGGATATTGCACGAGGCATCAATTATCTTCACCATAGCAACCCACCTATAATACACAGAGATTTGAAGTCTTCAAATCTTCTAGTCGATAAGAATTGGACTGTGAAGGTTGGAGATTTTGGTCTTTCACGTCTTAAGCACGAAACATATCTCACAACTAAGACAGGGAGGGGCACGCCTCAATGGATGGCACCAGAAGTCCTTCGTAATGAACCTTCGGATGAAAAGTCTGATGTATACAGCTTTGGAGTGATATTATGGGAGCTTGCAACTGAAAAGATCCCTTGGGAGAATCTCAACTCAATGCAGGTGATTGGAGCTGTAGGGTTCATGAACCAGCGGCTAGAAATTCCAAAAGAAGTTGATCCTCGGTGGGCTTCCATAATTGAAAGCTGCTTTCATAGTGATCCAACATGCCGACCAACGTTCCAGGAACTGCTTGAAAGGCTTAGAGAGTTGCAAAGATGGTATGCTATTCAGTTCCAGGCAGCTCGGTCGGGTGGCGGGGAAACCATCCAAAAGGAGTCCTAG 2244 0.4554 METSQTEELLKKIQQLEEGHAHLKQEMSKLKLSGGGGDGGGDVRAHRQRSHSVSPQRFRLGRRTDAAAAAAAWNKGSCSFKQSSPLQRESRSGSEPQNDGGDGGGGGASCGPSAVNFSDKQYLNILQSMGQSVHILDLNSRIIYWNRSAEKLYGYAAEEVLGQEGIELIVDPSDFALANDVVNRVTMGESWTGQFPVKNKMGEKFLVVATNTPFYDDDGSLVGLICVSSDSRPFLEMRVPFSGVKNAGSSAGSNRPRSSITNKLGLDSQQPLQVALASKISNLASKVSNKVKSRIRTGENNMDHEGVGGESQNSEHSFSESDQREDANSSGASTPRGDAALSPFGLFSHVEEKSLGKTSRDSGDESEGKPIHRIITSKAEAWIQKKTLSWPWRANDREGSEAKNLSSGVKQESQAGPINNEASGSWSSPLNVNSTSSASSCGSAGSCAVSNKVDVDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVIMSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTSKLDWRRRAHMALDIARGINYLHHSNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKEVDPRWASIIESCFHSDPTCRPTFQELLERLRELQRWYAIQFQAARSGGGETIQKES* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1638 747 Pfam PAS fold 121 228 IPR013767 GO:0006355
Lan1g1638 747 CDD STKc_MAP3K-like 475 721 - -
Lan1g1638 747 ProSiteProfiles PAS repeat profile. 118 189 IPR000014 -
Lan1g1638 747 MobiDBLite consensus disorder prediction 393 430 - -
Lan1g1638 747 SMART pas_2 120 187 IPR000014 -
Lan1g1638 747 MobiDBLite consensus disorder prediction 291 373 - -
Lan1g1638 747 MobiDBLite consensus disorder prediction 245 266 - -
Lan1g1638 747 CDD PAS 129 230 IPR000014 -
Lan1g1638 747 PRINTS Tyrosine kinase catalytic domain signature 543 556 IPR001245 GO:0004672|GO:0006468
Lan1g1638 747 PRINTS Tyrosine kinase catalytic domain signature 582 600 IPR001245 GO:0004672|GO:0006468
Lan1g1638 747 PRINTS Tyrosine kinase catalytic domain signature 629 639 IPR001245 GO:0004672|GO:0006468
Lan1g1638 747 PRINTS Tyrosine kinase catalytic domain signature 648 670 IPR001245 GO:0004672|GO:0006468
Lan1g1638 747 PRINTS Tyrosine kinase catalytic domain signature 692 714 IPR001245 GO:0004672|GO:0006468
Lan1g1638 747 Pfam Protein tyrosine and serine/threonine kinase 469 721 IPR001245 GO:0004672|GO:0006468
Lan1g1638 747 MobiDBLite consensus disorder prediction 401 430 - -
Lan1g1638 747 TIGRFAM sensory_box: PAS domain S-box protein 118 229 IPR000014 -
Lan1g1638 747 MobiDBLite consensus disorder prediction 246 266 - -
Lan1g1638 747 SUPERFAMILY PYP-like sensor domain (PAS domain) 122 230 IPR035965 -
Lan1g1638 747 Gene3D PAS domain 130 233 - -
Lan1g1638 747 MobiDBLite consensus disorder prediction 78 97 - -
Lan1g1638 747 SUPERFAMILY Protein kinase-like (PK-like) 458 721 IPR011009 -
Lan1g1638 747 MobiDBLite consensus disorder prediction 353 373 - -
Lan1g1638 747 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 440 742 - -
Lan1g1638 747 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 32 411 - -
Lan1g1638 747 MobiDBLite consensus disorder prediction 19 65 - -
Lan1g1638 747 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 32 411 - -
Lan1g1638 747 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 440 742 - -
Lan1g1638 747 Gene3D Transferase(Phosphotransferase) domain 1 548 731 - -
Lan1g1638 747 ProSitePatterns Serine/Threonine protein kinases active-site signature. 588 600 IPR008271 GO:0004672|GO:0006468
Lan1g1638 747 Gene3D Phosphorylase Kinase; domain 1 462 546 - -
Lan1g1638 747 ProSiteProfiles Protein kinase domain profile. 469 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1638 747 MobiDBLite consensus disorder prediction 78 111 - -
Lan1g1638 747 Coils Coil 6 33 - -
Lan1g1638 747 SMART serkin_6 469 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1638 Lan-Chr1 28047012 28053996 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1638 1 738 MAP Kinase Kinase Kinase AT3G06620 60.742 0.0 909
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lan1g1638 PK_Tyr_Ser-Thr 2.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1638 - - pvu:PHAVU_003G114400g 1145.18